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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.2G247300.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
HD-ZIP |
Protein Properties |
Length: 240aa MW: 26023.8 Da PI: 4.5224 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.2G247300.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 21 | 74 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k
Sevir.2G247300.2.p 21 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 74
45689************************************************9 PP
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2 | HD-ZIP_I/II | 135.3 | 2.1e-43 | 20 | 112 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e+
Sevir.2G247300.2.p 20 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRHDHDALRRDKDALVAEI 110
69***************************************************************************************99 PP
HD-ZIP_I/II 92 ke 93
ke
Sevir.2G247300.2.p 111 KE 112
87 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009637 | Biological Process | response to blue light |
GO:0030308 | Biological Process | negative regulation of cell growth |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MMEAEGDAEE EMMACGGGGE KKRRLSAEQV RALERSFEVE NKLEPERKAR LARDLGLQPR 60 QVAVWFQNRR ARWKTKQLER DYAALRHSYD ALRHDHDALR RDKDALVAEI KELKAKLGDE 120 EAAASFTSVK AEPAASDGPP AAGVGSSESD SSAVLNDADA LVTEAPVPEV QGTLLPTPAA 180 AAGAGAAGNH GGVFFHGNFL KVEEDETGFL DDDEPCGGFF AVEQPPPMAW WTEPTEHWN*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 45 | 51 | ERKARLA |
2 | 68 | 76 | RRARWKTKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034257 | 0.0 | BT034257.1 Zea mays full-length cDNA clone ZM_BFc0009H14 mRNA, complete cds. |
GenBank | BT039062 | 0.0 | BT039062.1 Zea mays full-length cDNA clone ZM_BFb0367N11 mRNA, complete cds. |
GenBank | BT055374 | 0.0 | BT055374.1 Zea mays full-length cDNA clone ZM_BFb0091J03 mRNA, complete cds. |