PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G236000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GeBP | ||||||||
Protein Properties | Length: 444aa MW: 47349.6 Da PI: 8.4439 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 92.9 | 3.6e-29 | 192 | 290 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 +++rlws De+v+L+Gl ++ak+g+ +++di +f+ +++++s++v+ +q+++K+rrLK+K++ ++ak+g++p++ ++hdq+++e Sevir.2G236000.1.p 192 RPSRLWSPADELVILRGLAACRAKRGVlpGSMHDIAKFHGHIESELSVQVTVTQVSDKVRRLKQKYNLFASRAKNGRDPDLPTPHDQSVYE 282 679************************877888********************************************************** PP DUF573 91 lskkiWgs 98 l k++Wg+ Sevir.2G236000.1.p 283 LGKRVWGT 290 ******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.0E-26 | 194 | 289 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MAPKRPAAAP SGSASEASDA EADAPLHHPS SPSPSKTPPP PNPNPKSSAA AAAAMAAEDS 60 AAAGSDSGAA YDSDADHRPA LRKEGAAASP SRRPRSPRPP SRSRSPDAAS ESDGAASDAD 120 PAAGDGADSA DDGNASPLPA PRPPRGEAAA IKPLSSRPMD PPRHSMVPSF TEPRRKRPRS 180 VAVPSSVEQL KRPSRLWSPA DELVILRGLA ACRAKRGVLP GSMHDIAKFH GHIESELSVQ 240 VTVTQVSDKV RRLKQKYNLF ASRAKNGRDP DLPTPHDQSV YELGKRVWGT TDIAGGGSTA 300 GDGYEISGGG GESEEEREIG ESDEDEDSGR DDRARKNRRL RPITMANGNV AGFGAVNVNS 360 RGKFDFEKGK DAYPYLWETV EDLSKEHPHG VAFKKAFELI EGPKARGMEE KLRKFRLTEI 420 RHQLRRMELM KETVKMVLDA LEG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G236000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956982.1 | 0.0 | STOREKEEPER protein | ||||
TrEMBL | A0A368Q259 | 0.0 | A0A368Q259_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G092409_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2671 | 35 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 2e-14 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G236000.1.p |