 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.2G234000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 349aa MW: 36595.7 Da PI: 6.3778 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G234000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.3 | 1.1e-17 | 170 | 224 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k
Sevir.2G234000.1.p 170 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 224
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 126.5 | 1.2e-40 | 170 | 260 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
Sevir.2G234000.1.p 170 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-AL 259
69*************************************************************************************9.55 PP
HD-ZIP_I/II 92 k 92
k
Sevir.2G234000.1.p 260 K 260
5 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MELGLSLGET MADAGRDLVL GLGMGLGVRR DEEAETGREV RREHEFGAGR CGRSSPEPAV 60
RLTLLPGLVP SLGLPWPPSS ETSRHLEAST RGFDVNRAPS LSVAGAAAED EEEQDDAAGA 120
AAAASSSPNN SAGSFPTDFS AQGQAGTGGG GGGDRAGSRA SDEDDGGSAR KKLRLSKEQS 180
AFLEESFKEH ATLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE 240
TLTEENRRLQ KELAELRALK TVHPFYMHLP ATTLSMCPSC ERVASNSSAP AAAAPAPASS 300
SSPSAAGGGI AAAPPEQRPS SFAALFSSPL NRPQAAQPQP QPQAPASS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 218 | 226 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
