PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G230600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 229aa    MW: 23938.8 Da    PI: 8.5236
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G230600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-054567123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+++F ++  L  H++ H
  Sevir.2G230600.1.p 45 FACNYCHRRFYSSQALSGHQNAH 67
                        78******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.87E-64472No hitNo description
PROSITE profilePS5015711.4064572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MENELPASGA HSVSLNVLSP RGHRLGPAVA TVPAVDGGCH LGESFACNYC HRRFYSSQAL  60
SGHQNAHKLE RTLAKRSQDI LAAVASPSSS PPPTPAPSAI VFHAAPPKHN NNRDDDFLHA  120
TDTERLDGHA GWGADTAVAA DGGCGRLGLG HGWNGDDRPA WPGPLVPVAG WCGRQRGVAA  180
GGGMLWLVVR LVWPAAGLRQ PTVPKWRSAV DGGGRRRMGK GDGEQLVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G230600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0868809e-49BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds.
GenBankBT0869179e-49BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds.
GenBankBT0871609e-49BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds.
GenBankEU9605229e-49EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684518.13e-68uncharacterized protein LOC111258057
TrEMBLA0A368RN484e-54A0A368RN48_SETIT; Uncharacterized protein (Fragment)
STRINGSi032580m3e-48(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.18e-16zinc finger protein 2