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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G214400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 342aa MW: 34737.9 Da PI: 6.5901 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.1 | 5.5e-12 | 252 | 297 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Sevir.2G214400.2.p 252 HSIAERLRRERIAERMKALQELVPNA-----NKADKASMLDEIIDYVKFLQ 297 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.53E-13 | 245 | 301 | No hit | No description |
SuperFamily | SSF47459 | 7.2E-17 | 245 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.136 | 247 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 249 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-9 | 252 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-13 | 253 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MQPTTREMQA MAAAGQISLD DLRAAAGSAG GVHDDFLDQM LGGLPPSAWP ELASAAGAKV 60 PEGGAQAEGM QQHQHQQFGG GLYDESALLA SRLRQHQISG GPGGGESAAA AKQMVLQQLA 120 DLRQGHHMLL QGMGRSTGGG GDGGLLLPLS LGSGGSGGDV QALLKAAANS AGGEAGGVFG 180 GAFAGSLQQQ QHQHFQHHPQ QTAPLPGQGF GGGGGGASAG ASQPQAGASG GGAAAPPRQR 240 VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKA DKASMLDEII DYVKFLQLQV 300 KVLSMSRLGG AAAVAPLVAD MSSEVDYPLS LSLAVESMEY Q* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 261 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G214400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956830.1 | 1e-143 | glycine, alanine and asparagine-rich protein | ||||
TrEMBL | A0A2T7ESD1 | 1e-147 | A0A2T7ESD1_9POAL; Uncharacterized protein | ||||
STRING | Si029708m | 1e-143 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 4e-21 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G214400.2.p |