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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G209800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 18462.7 Da PI: 7.8564 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ F++ L H+++H Sevir.2G209800.1.p 41 HICGYCKREFRSAQGLGGHMNVH 63 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.98E-5 | 39 | 67 | No hit | No description |
PROSITE profile | PS50157 | 9.619 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.1E-6 | 41 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MERDDGYTKL QQLPCSDNFS LAASSSWPSP QIRSSSSATS HICGYCKREF RSAQGLGGHM 60 NVHRLDRARL IHHQCSSHHH LALAAPPPNP NPSRAVVELM SSGCRAHGAA SDGGSAVPPA 120 AKPGVCRFSL ASSSSALTKD IEAIKNLELR MGACSHGDDA EERLDLELRL GHS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G209800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956784.1 | 1e-124 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A368Q1F4 | 1e-122 | A0A368Q1F4_SETIT; Uncharacterized protein | ||||
STRING | Si032740m | 1e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22243 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 5e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G209800.1.p |