PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G194400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 364aa MW: 38063.6 Da PI: 6.7285 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.2 | 5.7e-38 | 65 | 165 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rrkC+++C+lap+fpa+q+++f n+h+lFG+s+++k+l+++++e+ da+++l+++++ara dPv G+v +i +l++q++q++ Sevir.2G194400.1.p 65 ACAACKYQRRKCNPNCPLAPHFPADQQRRFLNAHRLFGVSKIQKTLRRIDPERSADAIKTLIFQSDARAADPVGGCVTIIENLRRQIDQTE 155 7****************************************************************************************** PP DUF260 92 aelallkeel 101 ela++++++ Sevir.2G194400.1.p 156 LELAYVRQQI 165 ******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.641 | 64 | 165 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-36 | 65 | 162 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MSTSSSSPKP PPPQHLRLHV DTATAATTTN GSAASPGSAS SSHSSRSPRP SASAAAAAGP 60 GQNQACAACK YQRRKCNPNC PLAPHFPADQ QRRFLNAHRL FGVSKIQKTL RRIDPERSAD 120 AIKTLIFQSD ARAADPVGGC VTIIENLRRQ IDQTELELAY VRQQIAIYRR AAAAGGADPA 180 MILPAAASAA TAVAGQDNAG VAVGALYAGQ GPVPAGAGVI FQDQQGYHVL KVDDQNGHPP 240 PQQLYNYFCY GMAGDEATSP DGSVQQQYGF ADAAGVKIGS PAGLGEQLEQ QCRLEVVPFV 300 DAFDVKPQAM PATIEHHGPA GVVRREDKLA AAVLKHDVDQ HMEEPAETAA GAPCELELGF 360 SSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-25 | 55 | 168 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-25 | 55 | 168 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G194400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 2e-44 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680048.1 | 0.0 | LOB domain-containing protein 6-like | ||||
TrEMBL | K3ZUI1 | 0.0 | K3ZUI1_SETIT; Uncharacterized protein | ||||
STRING | Si030262m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-29 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G194400.1.p |