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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.2G178000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
HB-other |
| Protein Properties |
Length: 382aa MW: 42129.3 Da PI: 6.9015 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G178000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 24.8 | 3.8e-08 | 14 | 75 | 7 | 56 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
f ++++ e+e+ ++ n p+++ + LA+k ++ +qV +WFqNrR+ ++
Sevir.2G178000.1.p 14 FLPSEVAEMEARLQQlnNAIPTRTVLQTLADKFsasperagrvTIQPKQVWNWFQNRRYSHR 75
55677888888888666999***************************************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MGRPPSTGAP AFRFLPSEVA EMEARLQQLN NAIPTRTVLQ TLADKFSASP ERAGRVTIQP 60
KQVWNWFQNR RYSHRAKTTR AAPPPAAKMT PSGADHLQHA ANSSAFRAGQ PSAVAAHHGS 120
SPSAGKNPVE GVQVEFEAKS ARDGAWYDVA AFLSHRLFES GEPEVRVRFS GFGAEEDEWI 180
NVRKCVRQRS LPCEATECVA VLPGDLILCF QEGKEQALYF DARVLDAQRR RHDVRGCRCR 240
FLVRYDHDSS EEIVPLRKVC RRPETDYRLQ ILHAARAAAT MDVHTPPKEV KLELTSNEKS 300
PAEQKAPKQH KMMDVNTDEV TMVSGVEQEV TPAKAGAGAS LPSATPETRN SSSDMMRDGE 360
SASVVEDDDE VQVVEKMKEG D*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 3e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 3e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 3e-47 | 136 | 264 | 6 | 134 | SHH1 SAWADEE |
| 4iur_B | 3e-47 | 136 | 264 | 6 | 134 | SHH1 SAWADEE |
| 4iut_A | 3e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 3e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 3e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 3e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 3e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 3e-47 | 136 | 264 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-108 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
