PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G141200.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 653aa MW: 72164 Da PI: 8.2561

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G141200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	137	158	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Sevir.2G141200.2.p 137 KCTKCSREFCSSINFRRHTRVH 158 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	136	158	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MRARRSDDHW ARHGPERAFL FLSPPLPSIF LVRSTLGLPF LAASRRRQVE RPPLASSSSG 60 ASPVTSIRQL EMNASRKSSH VTTKDNAETA RDIISTSSQI QSMKVPDAVA AIAQAAAKAN 120 DLPGWPLFSP PKVQLDKCTK CSREFCSSIN FRRHTRVHRR TLKVDKDFPK NRDHLAAFWN 180 KLTVDDASTI LSLSDVVVEG VTGSSILTAL SSWMCKPGYA SLPMAYARAG SELLDLIQTK 240 VSMQLPVSSN ELFSVLDEAS EKTFLCTNTA ACIQKFLFDG EADKIATELK NVVACASYML 300 EQKLVEAWCA EKAAEALRCQ KLLVEEEEAA QKRQAELMER KRMKKLRQKE QRLKDLKDHD 360 VAIQLPKIMD DATCSPGIQS FKAISDPDLH EQEGSQYIQF PPPVTSETDN GFNANLLVED 420 VSCDSGPVMD KGAVLRPQVI SRHHLGRTEK LAENSIISGS AVASKQLALA RSSNYRDPNV 480 CSSPNRNKTW ARKVQAEIEK QCPKHGLDVD DEHNMAPSKN SRVLIGSISV AIEDGSEHLK 540 DFRSKDDPVT PSTKTVKHAS VKMMRPVTHV ENKNEGIPHS DGNSVPAEEK HSCFSGITDE 600 KSYSTCRSAD LAEGEHLRRT VFSSKEATAF LSQRWKEAIA ADHVKLVLCH DK*

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MRARRSDDHW ARHGPERAFL FLSPPLPSIF LVRSTLGLPF LAASRRRQVE RPPLASSSSG  60
ASPVTSIRQL EMNASRKSSH VTTKDNAETA RDIISTSSQI QSMKVPDAVA AIAQAAAKAN  120
DLPGWPLFSP PKVQLDKCTK CSREFCSSIN FRRHTRVHRR TLKVDKDFPK NRDHLAAFWN  180
KLTVDDASTI LSLSDVVVEG VTGSSILTAL SSWMCKPGYA SLPMAYARAG SELLDLIQTK  240
VSMQLPVSSN ELFSVLDEAS EKTFLCTNTA ACIQKFLFDG EADKIATELK NVVACASYML  300
EQKLVEAWCA EKAAEALRCQ KLLVEEEEAA QKRQAELMER KRMKKLRQKE QRLKDLKDHD  360
VAIQLPKIMD DATCSPGIQS FKAISDPDLH EQEGSQYIQF PPPVTSETDN GFNANLLVED  420
VSCDSGPVMD KGAVLRPQVI SRHHLGRTEK LAENSIISGS AVASKQLALA RSSNYRDPNV  480
CSSPNRNKTW ARKVQAEIEK QCPKHGLDVD DEHNMAPSKN SRVLIGSISV AIEDGSEHLK  540
DFRSKDDPVT PSTKTVKHAS VKMMRPVTHV ENKNEGIPHS DGNSVPAEEK HSCFSGITDE  600
KSYSTCRSAD LAEGEHLRRT VFSSKEATAF LSQRWKEAIA ADHVKLVLCH DK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	345	ERKRMKKL
2	343	353	KKLRQKEQRLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G141200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680015.1	0.0	uncharacterized protein LOC101770765
TrEMBL	A0A368PYV3	0.0	A0A368PYV3_SETIT; Uncharacterized protein
STRING	Si029321m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	9e-96	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Sevir.2G141200.2.p