PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G137100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 1054aa MW: 112989 Da PI: 6.9558 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 906 | 924 | 1 | 19 |
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 y+C+ Cg++Fs ++L++H Sevir.2G137100.1.p 906 YQCKTCGERFSLEEELRSH 924 9****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51391 | 36.346 | 62 | 190 | IPR006569 | CID domain |
Gene3D | G3DSA:1.25.40.90 | 5.5E-43 | 64 | 193 | IPR008942 | ENTH/VHS |
SuperFamily | SSF48464 | 2.15E-38 | 65 | 183 | IPR008942 | ENTH/VHS |
SMART | SM00582 | 1.9E-42 | 65 | 187 | IPR006569 | CID domain |
CDD | cd03562 | 1.89E-41 | 69 | 176 | No hit | No description |
Pfam | PF04818 | 1.1E-9 | 118 | 171 | IPR006903 | RNA polymerase II-binding domain |
PROSITE profile | PS50157 | 9.39 | 906 | 935 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1054 aa Download sequence Send to blast |
MRASASAAPM EASAASRRSA PGPDPGVAKK PRLAQPPPRD PRSSSYAAAS NGAAASAAEQ 60 ALVDELLGQY RTALGELTFN SKPIITNLTI IAGENLQAAK PIAALICANI LEVPSEQKLP 120 SLYLLDSIVK NIGKDYVKHF SSRLPEVFCK AYKQVDPSIH HSMRHLFGTW KGVFPPHPLQ 180 MIEKDLGFQS SANGSSSATP SRPESQSPRP SNSIHVNPKY LEARQQLNQP TKGILGSGAK 240 TAVIADAGND IERANRLGTD RSAVRRLDAP NARPNIQRTQ RDPFSNPVNE KQAGRDVRGL 300 GFSNISQQAV VGTGQVRSKS KGQDGIGGPY YATGVGSSEE QFDRRSNFYA SKDVRPSGPV 360 RLDSALLPTP SIDPDRIGRP SSNKSWKHSE EEEYVWDDVH SQAADYGSNS TVRKGEWMVD 420 DGNAKFASLQ RAKWAEGGAV EHLDPRFGLA TGQDRRLAAY MDHEEYIHGK HEVGPRIDRE 480 IRPDGQQLPA PRSSSLWASQ ENTHPDIGLD PRISRFSNQP GERSTIYTGT MSASITSSVP 540 VGLSGPYAGR SSLDSANSVP IRSTETFGQQ KHRYWSSSPP PAHSPSSTAP FVRQSSPNPA 600 EPDFYPSRSF SQLGQNPQEE YSLRAAALAK DSHFMSHNAG LPQGQPSLLA TQQGQKYATL 660 QPKSHIKPTD QVQASFSREN SPSLSRPSIQ LGEVSLPSDP TPITSDLTSA SNLLAGLIKS 720 GFKPNNPSDL ASLRAQPLVP SGPLPRTLPS PPVASSSLQN AAGENTTLQT QAPNTARPPL 780 PPGLPPPPTQ SAGIAAPLSS LLSSLVAKGL ISSPATDSSA AGPSQPNKAS SANATDVAAS 840 AMPMPAQKPS VGKETSNSDS SAPTNTLLPK VIKIKTGDLI GLEFKQEILR ECHEHVISSL 900 FGDQNYQCKT CGERFSLEEE LRSHAPCPVS RESKSYAGIA PKKWYPSKNS YIDGSHEIED 960 SAEASDADLG SAEEVCEFMV PADESQIICA LCGEPFDDIY SVEKGDWMYK DAVFLDYPKR 1020 EGSCGSNVEG EEHVPIVHVR CMPRGSNNGM EVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1sz9_A | 2e-14 | 66 | 170 | 8 | 112 | PCF11 protein |
1sz9_B | 2e-14 | 66 | 170 | 8 | 112 | PCF11 protein |
1sz9_C | 2e-14 | 66 | 170 | 8 | 112 | PCF11 protein |
1sza_A | 2e-14 | 66 | 170 | 8 | 112 | PCF11 protein |
1sza_B | 2e-14 | 66 | 170 | 8 | 112 | PCF11 protein |
1sza_C | 2e-14 | 66 | 170 | 8 | 112 | PCF11 protein |
2bf0_X | 2e-14 | 66 | 170 | 13 | 117 | PCF11 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G137100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699069.1 | 0.0 | uncharacterized protein LOC101754395 | ||||
TrEMBL | K3ZQA3 | 0.0 | K3ZQA3_SETIT; Uncharacterized protein | ||||
STRING | Si028783m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7261 | 7 | 8 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G137100.1.p |