 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.2G117200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 342aa MW: 37117 Da PI: 10.2906 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G117200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 339.6 | 7.7e-104 | 1 | 341 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.........rernlalsekkaavaerd...................mafl 61
mdddg+ + rn+g+y+ +k nlglqlmss++ +rd+k ++ +++ ++ +++++rd m+f
Sevir.2G117200.1.p 1 MDDDGNLSiRNWGFYDT---MKGNLGLQLMSSVPaDRDTKSllptgaflqHHGHHNAPHQLHSHHSRDsgggggasggmptephsihMDFS 88
9**************86...5************99******9*******988888888999999*************************** PP
GAGA_bind 62 qrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksidslqqlsepqledsave..lreeekle 133
+++++l+ ++ ++r++k+l+ +v + +++p+g+++++++ ++ ++ q pql +++e +e+++
Sevir.2G117200.1.p 89 RNEAWLHP-SHHQHPREQKVLHARPVGPAGHvghpghgghpghgghavHHHPTGYGMMPDAPHTLQMMQ---PQLPSQPQEppPCKEDHVP 175
********.9999***********99988778999************99*********99877655544...3333333222245677788 PP
GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYk 224
++p+e++ + ++++ +kkrq++++pk++k kk+kk +++++++ + +++ +r + ++k++++v+ng++lD s++P+PvCsCtG+++qCY+
Sevir.2G117200.1.p 176 TPPVEDHSVV-RTEPPVKKRQQGRQPKSPKPKKPKK-PAVPREDGAVNGHAPRGRGPRKTVGMVINGIELDLSNIPTPVCSCTGTPQQCYR 264
9998886555.55566677*****************.99**********99**************************************** PP
GAGA_bind 225 WGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
WG+GGWqSaCCtt+iS+yPLP+++krrgaRiagrKmSqgafkk+LekL +eGy+l+np+DLk++WAkHGtnkfv ir
Sevir.2G117200.1.p 265 WGAGGWQSACCTTSISTYPLPMNAKRRGARIAGRKMSQGAFKKVLEKLVGEGYNLANPIDLKTFWAKHGTNKFVVIR 341
***************************************************************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MDDDGNLSIR NWGFYDTMKG NLGLQLMSSV PADRDTKSLL PTGAFLQHHG HHNAPHQLHS 60
HHSRDSGGGG GASGGMPTEP HSIHMDFSRN EAWLHPSHHQ HPREQKVLHA RPVGPAGHVG 120
HPGHGGHPGH GGHAVHHHPT GYGMMPDAPH TLQMMQPQLP SQPQEPPPCK EDHVPTPPVE 180
DHSVVRTEPP VKKRQQGRQP KSPKPKKPKK PAVPREDGAV NGHAPRGRGP RKTVGMVING 240
IELDLSNIPT PVCSCTGTPQ QCYRWGAGGW QSACCTTSIS TYPLPMNAKR RGARIAGRKM 300
SQGAFKKVLE KLVGEGYNLA NPIDLKTFWA KHGTNKFVVI R*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
