PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G093800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 508aa MW: 53824.1 Da PI: 8.147 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.7e-17 | 183 | 232 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sevir.2G093800.2.p 183 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 232 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.5 | 1.6e-13 | 275 | 325 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g Sevir.2G093800.2.p 275 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 325 89********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-9 | 183 | 232 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-15 | 183 | 241 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.754 | 184 | 240 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-31 | 184 | 246 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.35E-10 | 184 | 239 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.5E-17 | 184 | 240 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.88E-25 | 275 | 335 | No hit | No description |
Pfam | PF00847 | 3.8E-9 | 275 | 325 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-17 | 275 | 334 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-32 | 276 | 339 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.081 | 276 | 333 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-16 | 276 | 334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 277 | 288 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 315 | 335 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MASPSIPFVP LTSHRAVPFA LGTTPPWPPP PRPDAAAARL LQEEEEAGVG GSRARSPAGL 60 ELEPMVLDLN AESPTAGSAS ATSSSSGVAG GGGGFFRFDL LGGSPDEEGC SPSPPVVTRQ 120 LFPSPHPDAA SPASDGSPPP GVAGASAHRA ADLGASAPAP AAAAPSSPAA GKKSRRGPRS 180 RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGLDADINFH 240 LKDYESDLKQ MRNWTKEEFV HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQLLGKKY 300 IYLGLFDSEI EAARAYDRAA IRFNGPDAVT NFDSSSYDGD VPLPPEIEKD VVDRDILDLN 360 LRISQPNVHD PKSDGILTGF GSNRDSPEAS SSIASQPIRP QWLVHPHSTL GSPQQPQLHA 420 SPPGFFVNLR EAPGMENYRT VEPAPQAFPP WAWQMQGSPA PLLPATAASS GFSTAAAAAT 480 AGVPPPPLGP GPFAGRHHHQ LRFPPTA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G093800.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955853.1 | 0.0 | floral homeotic protein APETALA 2 isoform X2 | ||||
Swissprot | Q8H443 | 0.0 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A368PWS2 | 0.0 | A0A368PWS2_SETIT; Uncharacterized protein | ||||
STRING | Si029636m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-88 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G093800.2.p |
Publications ? help Back to Top | |||
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