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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.2G093800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
AP2 |
Protein Properties |
Length: 509aa MW: 53895.2 Da PI: 8.147 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.2G093800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 54.2 | 3.7e-17 | 183 | 232 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Sevir.2G093800.1.p 183 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 232
78*******************......55************************998 PP
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2 | AP2 | 42.5 | 1.6e-13 | 275 | 325 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g
Sevir.2G093800.1.p 275 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 325
89********.7******...5...334336**********99**********99987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 509 aa
Download sequence Send
to blast |
MASPSIPFVP LTSHRAVPFA LGTTPPWPPP PRPDAAAARL LQEEEEAGVG GSRARSPAGL 60 ELEPMVLDLN AESPTAGSAS ATSSSSGVAG GGGGFFRFDL LGGSPDEEGC SPSPPVVTRQ 120 LFPSPHPDAA SPASDGSPPP GVAGASAHRA ADLGASAPAP AAAAPSSPAA GKKSRRGPRS 180 RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGLDADINFH 240 LKDYESDLKQ MRNWTKEEFV HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQLLGKKY 300 IYLGLFDSEI EAARAYDRAA IRFNGPDAVT NFDSSSYDGD VPLPPEIEKD AVVDRDILDL 360 NLRISQPNVH DPKSDGILTG FGSNRDSPEA SSSIASQPIR PQWLVHPHST LGSPQQPQLH 420 ASPPGFFVNL REAPGMENYR TVEPAPQAFP PWAWQMQGSP APLLPATAAS SGFSTAAAAA 480 TAGVPPPPLG PGPFAGRHHH QLRFPPTA*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Publications
? help Back to Top |
- Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]
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