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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.2G090100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
NAC |
| Protein Properties |
Length: 279aa MW: 30943.8 Da PI: 5.6456 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G090100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 163.5 | 7.5e-51 | 16 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeelv +yL+++++g+ ++ +i+evd+y+++Pw+Lp+++ +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+
Sevir.2G090100.1.p 16 LPPGFRFHPTDEELVAHYLCARAAGRAPPV-PIIAEVDLYRFDPWELPERALFGRREWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKP 105
79*************************999.88***************87778999*********************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
v + g++ g+kk Lvfy+g+ p+g+kt+W+mheyrl
Sevir.2G090100.1.p 106 VEH-AGRTAGIKKALVFYHGKPPRGVKTEWIMHEYRL 141
**9.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MVVPAHRRDA EAELNLPPGF RFHPTDEELV AHYLCARAAG RAPPVPIIAE VDLYRFDPWE 60
LPERALFGRR EWYFFTPRDR KYPNGSRPNR AAGTGYWKAT GADKPVEHAG RTAGIKKALV 120
FYHGKPPRGV KTEWIMHEYR LAGAGAKKPG KDGSLRLDDW VLCRLYHKKN EYEKMQGHKE 180
KVVEAEASLT DTRTPESEID DDAFPAFDDM APAPAPTTAP APAGAVQPKE EVQDFGSLGG 240
DDWLAGINLD DLQMDADFNM LVSPVAPKAD QDGGFPFF*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT041745 | 1e-160 | BT041745.2 Zea mays full-length cDNA clone ZM_BFb0043E11 mRNA, complete cds. |
| GenBank | DQ244280 | 1e-160 | DQ244280.1 Zea mays clone 4143 mRNA sequence. |
| GenBank | HQ858677 | 1e-160 | HQ858677.1 Zea mays clone UT1133 NAC transcription factor mRNA, partial cds. |
| GenBank | KP283536 | 1e-160 | KP283536.1 Zea mays NAC protein (Zma000584) mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Takasaki H, et al.
The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
Mol. Genet. Genomics, 2010. 284(3): p. 173-83
[PMID:20632034] - Ghosh T,Rai M,Tyagi W,Challam C
Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
Plant Signal Behav, 2016. 11(5): p. e1138192
[PMID:26829663] - Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
BMC Biotechnol., 2016. 16 Suppl 1: p. 35
[PMID:27213684]
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