 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.2G089200.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
NF-YC |
Protein Properties |
Length: 229aa MW: 24501.2 Da PI: 9.1697 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.2G089200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 164.6 | 1.3e-51 | 45 | 150 | 1 | 101 |
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86
ql++fw +q + +a+dfknh+lPlarik i+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rt
Sevir.2G089200.1.p 45 QLQAFWGYQrqeaeRASASDFKNHQLPLARIKMIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAMART 135
79****9996665556689************************************************************************ PP
NF-YC 87 difdflvdivprdel 101
d+fdflvdivpr+e
Sevir.2G089200.1.p 136 DVFDFLVDIVPREEA 150
************986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MDNQPLPYST GQPPATGGAP VPGVLGAAGP PPVPHHHLLQ QQQAQLQAFW GYQRQEAERA 60 SASDFKNHQL PLARIKMIMK ADEDVRMISA EAPVLFAKAC ELFILELTIR SWLHAEENKR 120 RTLQRNDVAA AMARTDVFDF LVDIVPREEA KEEPGSALGF AAAGPGAVGG GAAPAAGMPE 180 GRRRTSIRGP ATARKGKGLP QQAMAVPLDS LLLHLRALSD LLRSFVLV*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT085720 | 0.0 | BT085720.2 Zea mays full-length cDNA clone ZM_BFc0051B15 mRNA, complete cds. |
GenBank | EU957220 | 0.0 | EU957220.1 Zea mays clone 1585988 nuclear transcription factor Y subunit C-1 mRNA, complete cds. |
GenBank | JX428515 | 0.0 | JX428515.1 Zea mays subsp. mays clone pUT3114 CA5P11 CCAAT-HAP5 type transcription factor mRNA, partial cds. |