PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G085200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 709aa    MW: 76590.4 Da    PI: 6.1905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G085200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.3e-12519565455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h   Er+RR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Sevir.2G085200.1.p 519 SHVLKERQRREKLNERFIILRSLVPFV-----TKMDRASILGDTIEYVKQLR 565
                         79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-4815234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.622515564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17518582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-13519569No hitNo description
Gene3DG3DSA:4.10.280.102.9E-16519582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-10519564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-15521570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00351636677No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MAAAAAEGGE AVAVQKVLQA VAEGTGWTYA ALWRLCTRQG ALVWAEGHYN GAIKTRKTTV  60
APGGGGEEEE EEEGTAARRR RSRQLRELYD SLAAGAEADG GGGGGGGGSG SGREDGAVVA  120
RRSSAALAPE DLSETEWFYL MCGSYCFPPG LGLPGEAFAR RGHVWLCGAN KVNSKVFSRA  180
ILARITNICG NIWQSAGIQT VACIPVNEDG VLEIGTTEKV DEDIGLIEYA RSIFMDQHGI  240
PIMPTLSGHS TSTPSTHINH QPSQIKIEKY IGGRNVRPNN LNPEEEHIET EDDNHMIDSE  300
TNTENDSCRH LPLGNVGNGQ AGPNARSSDE PMQIETSESL RDGCTNHVDE EIPMLMVCQN  360
GDHPEQDELG SWHFLYEDLM NNKCLQSSAA QDPAVLAENA HYIEAVLTIL RHNACRQAQA  420
AASNTRTYDL AISKNSPFSR WNPNKGTSDL QRMLISEGTP QRMLKSILFT SAPTRCSSHQ  480
RHRGEATQSP EEPAGRDDGD GTGRSRRGQG QAQAELSASH VLKERQRREK LNERFIILRS  540
LVPFVTKMDR ASILGDTIEY VKQLRRRIQD LESSRASKEK RAQSTSSATM AEAWSKVRAV  600
EASSSCSTSG GGGGAGRPAS VASTEVQVSI IESDALVELR CPRRDGLLLR VMQALHRELG  660
LEVTSVQASS AGDVLLVELR AKVKEVHGGR STINEVKRTI HLIISSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-13132348192Transcription factor MYC3
4rqw_B4e-13132348192Transcription factor MYC3
4rs9_A4e-13132348192Transcription factor MYC3
4yz6_A4e-13132348192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G085200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU578997e-55U57899.1 Zea mays repressor-like protein (in1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679989.10.0transcription factor TT8
TrEMBLA0A368PW850.0A0A368PW85_SETIT; Uncharacterized protein
STRINGSi029106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-51bHLH family protein