PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G074900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 143aa    MW: 16056.2 Da    PI: 8.2157
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G074900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.78.9e-2777129159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         l+Dgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k      +d k v++tYe++Hnhe
  Sevir.2G074900.1.p  77 LNDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRK------HDLKSVITTYEEKHNHE 129
                         58**********************************......59999***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-3162131IPR003657WRKY domain
SuperFamilySSF1182908.89E-2569131IPR003657WRKY domain
PROSITE profilePS5081130.0972131IPR003657WRKY domain
SMARTSM007742.1E-2877130IPR003657WRKY domain
PfamPF031062.8E-1978129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDMPCKAQQV KLFCTVSIEC EGDEDETESK RRKLDDLVTS TIITVVATST IDMGAAASRA  60
FREPRVVVQT TSEVDILNDG YRWRKYGQKV VKGNPNPRSY YKCTHPGCSV RKHDLKSVIT  120
TYEEKHNHEV PAARIHSPPL FT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-3468132878Probable WRKY transcription factor 4
2lex_A7e-3468132878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G074900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0692294e-65BT069229.1 Zea mays full-length cDNA clone ZM_BFb0368E24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660121.11e-101probable WRKY transcription factor 2 isoform X1
RefseqXP_014660122.11e-101probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG773e-43WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A368PWH41e-100A0A368PWH4_SETIT; Uncharacterized protein
STRINGPavir.Bb02418.1.p3e-71(Panicum virgatum)
STRINGSi031470m4e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123382233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.15e-45WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]