PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G074000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 272aa    MW: 29125.3 Da    PI: 9.352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G074000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11151198455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Sevir.2G074000.1.p 151 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 198
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-18145215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.88E-11145202No hitNo description
PROSITE profilePS5088816.406147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-19147217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-9151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDPAASSVVA AELWRPPHHH HLAPAASGPH HEASSVVTTA DRSNGGRSGG GSSRRRPRRD  60
APAAEEEPSK LASTSGTAAA SGGGGGGRDS ADPEMAKRLK KMTSSDDKIR TEVETNSGNA  120
SKSVDKKPAP PEPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKVL QDLVPGCNKV  180
IGKASVLDEI INYIQSLQRQ VEFLSMKLEA VNAHVNSATG SFPSKDFDAP APPYSTAPGL  240
TFDPHTPREY PQALTSDWLH MQIGNTYERV T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450GGRSGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G074000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955736.10.0transcription factor BHLH094
SwissprotQ69WS31e-108BH094_ORYSJ; Transcription factor BHLH094
TrEMBLK3ZW090.0K3ZW09_SETIT; Uncharacterized protein
STRINGSi030790m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-62BIG PETAL P