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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G055300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CPP | ||||||||
Protein Properties | Length: 884aa MW: 95338.6 Da PI: 7.3673 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50 | 5.7e-16 | 570 | 608 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk Sevir.2G055300.1.p 570 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 608 589**********************************96 PP | |||||||
2 | TCR | 50 | 5.8e-16 | 655 | 694 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ Sevir.2G055300.1.p 655 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCESCKNTF 694 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.8E-17 | 569 | 610 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.046 | 570 | 695 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.0E-11 | 572 | 607 | IPR005172 | CRC domain |
SMART | SM01114 | 3.5E-16 | 655 | 696 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-11 | 657 | 693 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 884 aa Download sequence Send to blast |
MAGSPAASVG ACTSYPNTTH APIQSNRREP CARLLALRRR PAGQLASSAC RHVSPCGVSL 60 IADHEADRAP SKCRPMRPPH HDNTGKHYGQ GRMLHRCSRS AEERIAAPEM DTPDRAAAQP 120 AASRAEDSPV FSFINNLSPI EPLKSAYNAN SLQGYQSINI TSISSIFTSP HDNAHKEPRL 180 PKSSLGEISE SEVCADGKNT NKPTKSSNAV RLFACTSTVT QETHTVTCSD VVDPPTVPCD 240 LAQPAQFDNG SPDHNTTPCH GVRSDLKQDK CRKQDVVQTV KSTVEKRKCL FSTEIQLLDG 300 GQPVNDNNEV LGCEWSDLIA TTSGELLAFD STMDDHHRGM HLAAKNAESC GYLLSKLAGD 360 GEISERAYPN ASGQVYYQEL VMGEDQTENA QIFQDGQQTI STEEIQDNIY EANGCIPLDY 420 KVESQQQRGV RRRCLVFEAA GFSNSVVQKE SVEDLSVSTC KGKGHVQTQP RGLRGIGLHL 480 NALALTPKGK MACQDPMASA LLPSSASEKD AHGKLLCAGE NFTHSGGELL EFPMDDCSSG 540 GFPLNDHVSS QSVSPQKKRR KTDNGDDGEA CKRCSCKKSK CLKLYCECFA AGVYCSEPCS 600 CQGCLNKPIH EEIVLSTRKQ IEFRNPLAFA PKVIRMSDAG LETGEDPNNT PASARHKRGC 660 NCKKSSCLKK YCECYQGGVG CSSNCRCESC KNTFGRRDAE TELTEEMKQE GEQTENSGKE 720 KENDQQKANV QSEDHPLVEL VPITPPFDLS SSLLKLPNFS SAKPPRPSKA RSGSSRSSAS 780 KATTTLQSCK SSKAAGSGID EEMLDILKEA DSPSRVKTTS PNRKRVSPPH NALSISPNRK 840 GGRKLILKSI PSFPSLTGDS NSGSAMNNTD NTFSASPLAL GPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-15 | 572 | 692 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 4e-15 | 572 | 692 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 556 | 560 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G055300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955606.1 | 0.0 | protein tesmin/TSO1-like CXC 3 isoform X1 | ||||
TrEMBL | A0A368PV87 | 0.0 | A0A368PV87_SETIT; Uncharacterized protein | ||||
STRING | Si028949m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-79 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G055300.1.p |