PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G043200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 655aa    MW: 69482.1 Da    PI: 4.6232
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G043200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.46e-3016110293
              DUF260   2 CaaCkvlrrkCakdCvlapyfpa..eqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                         Ca+C++lrr+C+++Cv+apyfpa  +++++fa+vh++FGasnv ++l+++  +++r++a+++lv eA+ar+rdP  G+v+ +  lq   e+
  Sevir.2G043200.1.p  16 CAGCRTLRRRCVPGCVFAPYFPAegDDTSRFAAVHRVFGASNVARMLEDVsLPSDRRRAAETLVEEARARVRDPALGCVSYVAVLQMLNEK 106
                         ***********************55568**********************55777**************************9999987777 PP

              DUF260  90 lkae 93 
                         ++++
  Sevir.2G043200.1.p 107 AREQ 110
                         7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.4514118IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-3116110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MPEEDEAEAQ PVQTTCAGCR TLRRRCVPGC VFAPYFPAEG DDTSRFAAVH RVFGASNVAR  60
MLEDVSLPSD RRRAAETLVE EARARVRDPA LGCVSYVAVL QMLNEKAREQ PAARVEARAQ  120
AERALAHARE RDAELLAVRN AADLEWWRQQ RQAEKHAAGG RNTNEQVAET ENTAAAAAAK  180
GESSSEQTMV MTQAEAGTEL DSTEGNGYPR QQMAETEEPA PAAVAASERA MLTPPAAAVD  240
QRHHLAAPHA GTEPSIPGIG HLQQKVLEDK QSSTAAAEAA REEAMASGQA PAAAPQHHES  300
AATQLAGAGT GFLDGEQWAA AEALAKELDT MRRRYAAAQQ HHHPAAAHYA SMGLHVTPRL  360
QKPPHQQAAA AAEVASGQDS MATLAQQIAE AEAEAAAEQD MMMQLLAAGA PQYGNLAAQY  420
DVDAELDVTL AHGHQDMRQQ MTELGTLGHE PPQEIVQQLA AAAKVAMEQR IMPQIATAEL  480
AGEQETIMQQ VAAAAELARE QELIVQQARQ QEMAMLLQAS AAPMAQYSET ELGVSLGHQP  540
LVQQLLQEQQ LADAVGVAGE PNTTTVVQHV AAYADAKHGR DSGATAAFRP PGLSEAAPFL  600
VEQSLQGQTA RVLGLQMGSS LPPLGQPHAQ ASQQQGTDGG DDGQSSDLTA YLYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-25161011294LOB family transfactor Ramosa2.1
5ly0_B4e-25161011294LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G043200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680381.10.0uncharacterized protein LOC111256464
TrEMBLA0A368PUY30.0A0A368PUY3_SETIT; Uncharacterized protein
STRINGSi032865m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16457913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-27LBD family protein