PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G031400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 423aa    MW: 46439.8 Da    PI: 5.236
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G031400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.95.4e-081341649
                        HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgklyey 49
                        Rr+g+ K A  LS+L++a+va+ + s++gk+  +
  Sevir.2G031400.1.p  1 RRAGLYKTAADLSTLTGARVAIALESESGKMSSF 34
                        9******************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.11138IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-8148IPR002100Transcription factor, MADS-box
PfamPF003191.3E-8134IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
RRAGLYKTAA DLSTLTGARV AIALESESGK MSSFGTPSAG PIIDSFLSGK APMDPFVNKE  60
QKSEITILQN EVFKVEKEKF MEDKRTKETI ARAKEVQETL GKAKLAYGKI EDLSVEELNE  120
LVHDLSQIEQ EIDDRLIRPQ QPSYQLEVGG SRDPFLGRPS SSSSPSSQIQ MPPRRLPWTP  180
IQPSLQLPKS SWSLPQSSRS RSSLLNPSML PSAQAQPISM PLFQHSQMPQ HASAVQPQAQ  240
MTLSSTETYP HNYNTLEMHI NGNISLPFIQ SSLMPALPPP PSPSTQITFY NEFPPPSSSQ  300
QPPTPLPIEA EHYMVEHPEN HSSTQDFTAG HPFANHQWPS PIPSNEPYYD ISLYGLNLYL  360
GDHGDYGGLV TVERDMAGPS GLHQQTYDCP YRNFLGSSSS GESHGDYGPG NNVGDMAHLG  420
DS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G031400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958932.10.0uncharacterized protein LOC101780877
TrEMBLA0A368PUF60.0A0A368PUF6_SETIT; Uncharacterized protein
TrEMBLK4A1W60.0K4A1W6_SETIT; Uncharacterized protein
STRINGSi032862m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.16e-09AGAMOUS-like 28