PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G018300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 384aa MW: 43402.3 Da PI: 7.134

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G018300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.6	5.1e-21	80	172	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt ++v++L+ a+++++ + ++++ ++k++W+ vs++m er+f++sp+qC++k+++lnkry++++e+ +++ +se +++ +++ Sevir.2G018300.1.p 80 KWTSDMVKLLVSAVSYIDPDHGTSSgrrkhtmlKMKGKWRLVSSAMTERKFTVSPQQCEDKFNDLNKRYRRLTEILGQGmASEIVKKPALL 170 7***************99999877778888899****************************************99667777776666 PP trihelix 83 dq 84 +q Sevir.2G018300.1.p 171 EQ 172 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.4E-18	78	198	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MEGNLSPQAL IPSGVPFDLG QPLHFAAQPQ VVQVHQGVIA ATTMNKIQEF GNVVEASLRE 60 EEGADDGKAA VSASQWPRVK WTSDMVKLLV SAVSYIDPDH GTSSGRRKHT MLKMKGKWRL 120 VSSAMTERKF TVSPQQCEDK FNDLNKRYRR LTEILGQGMA SEIVKKPALL EQVSLSGKLR 180 EEAKKHLRSK HLHYEEMCSY HNHNRSCLPD DPALQRSLHM ALRSLDEQGK KCSFGYGDED 240 DPMLVSDGDD EDDGFNVDHR HSRVHGTKKQ KHDHEGGHCG SDLSKVVAVD ANRMFPERIG 300 GSAAEKNPIG MNAIQVERER LKIKGEMLKL EQSHLKWLKS SEEEDRELQK MKLENERMQL 360 ENEQLEQELK LKEIEMGIKP KRI*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MEGNLSPQAL IPSGVPFDLG QPLHFAAQPQ VVQVHQGVIA ATTMNKIQEF GNVVEASLRE  60
EEGADDGKAA VSASQWPRVK WTSDMVKLLV SAVSYIDPDH GTSSGRRKHT MLKMKGKWRL  120
VSSAMTERKF TVSPQQCEDK FNDLNKRYRR LTEILGQGMA SEIVKKPALL EQVSLSGKLR  180
EEAKKHLRSK HLHYEEMCSY HNHNRSCLPD DPALQRSLHM ALRSLDEQGK KCSFGYGDED  240
DPMLVSDGDD EDDGFNVDHR HSRVHGTKKQ KHDHEGGHCG SDLSKVVAVD ANRMFPERIG  300
GSAAEKNPIG MNAIQVERER LKIKGEMLKL EQSHLKWLKS SEEEDRELQK MKLENERMQL  360
ENEQLEQELK LKEIEMGIKP KRI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G018300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955374.1	0.0	uncharacterized protein LOC101757359
Refseq	XP_022679624.1	0.0	uncharacterized protein LOC101757359
TrEMBL	K3ZU64	0.0	K3ZU64_SETIT; Uncharacterized protein
STRING	Si030145m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-57	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Sevir.2G018300.1.p