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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G017000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | G2-like | ||||||||
Protein Properties | Length: 359aa MW: 38181.9 Da PI: 7.9626 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.2 | 1.3e-31 | 235 | 290 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+ W+p+LH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Sevir.2G017000.1.p 235 KARRTWSPDLHRQFVAALNQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 290 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.084 | 232 | 292 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-16 | 233 | 293 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 233 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-25 | 235 | 290 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.1E-7 | 237 | 288 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGLDVLEIGM GSDLSLDLRY FASKAVRQAR DAPASDVDAC IRRLEEERGK IEMFRRELPL 60 CARLLAEVID VMKAEAGKKA RSDRKAAAEE DGAAGDKSKW MSTAQLWTGD SGREDDSESE 120 KQDKGRSSPE AKSGGGGAFV PFKAVGSGAP AFAPLCLRVD DKAADAGMPD LSLLSPPAIK 180 SAPAPAGAAE ESRRQVVGFA QAAARAVAMA PSAPSLTLQP QPQQTAQQQQ QQARKARRTW 240 SPDLHRQFVA ALNQLGGPQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH NRRAPGSAVV 300 SQPIVLVGGL WIPQEQSSSQ SGSPQGPLHF STSGLAVSSA ATVSCEEEDG RSESYGWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-14 | 235 | 288 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-14 | 235 | 288 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-14 | 235 | 288 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-14 | 235 | 288 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G017000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955370.1 | 0.0 | transcription factor NIGTH1 | ||||
TrEMBL | K3ZUK5 | 0.0 | K3ZUK5_SETIT; Uncharacterized protein | ||||
STRING | Si030286m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G017000.1.p |