PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G384900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 667aa    MW: 73342.6 Da    PI: 4.8845
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G384900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-07108130427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         ++C +f++ G C  GdrC F+Hgp
  Sevir.1G384900.1.p 108 VPCYYFQK-GMCAKGDRCAFSHGP 130
                         69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.0371544IPR000571Zinc finger, CCCH-type
SMARTSM003560.0191543IPR000571Zinc finger, CCCH-type
PfamPF156635.6E-121670No hitNo description
PROSITE profilePS5010311.0284672IPR000571Zinc finger, CCCH-type
SMARTSM003562.54871IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582104131IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6104130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5106129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5109131IPR000571Zinc finger, CCCH-type
PfamPF146080.27109129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDSAAARPDE EEARRRRNTD CIYFLASPLT CNKGSECDFR HSDAARMNPR DCWYWFNGNC  60
ANPKCSFRHP PLDNLLGAPT TPRAPQQPAP QVSAPAQAHG SVPAKQAVPC YYFQKGMCAK  120
GDRCAFSHGP ESAGNPAPQP VAPAKVFTPA LHPNPQLKNS WTKPSPSPQQ NTPAGIPDKS  180
KLSAHDAKPL QKQHVTSRVD HLSRIFQNHS NSYAQSGSTK HHKPQPPVQD DLTEDGMEVG  240
EFVREPSAAS GVLVGGVNDD SEHSFKGNRS SYHHRTNGTG ITRQTHGGYE PERSHRGSAE  300
RLSSEKRISH REPMPAVAAS SSDLRHRLLK QRKLNNNSRS TEAPDANDAY LEGERNDQHR  360
WRREEHDGPL SRSRLRDRIR LPGETSLDRL GSRSEKEWDR GPRGRLSPPK HSDLRGKLHE  420
RLKARSAEEI PGNSAKSLVV KASTVEDAES LNFAGPKSLA ELKAKKGVGS SSGEDAIVKG  480
ISSSRMTSGI IPSREPAPFE GPKPLSAILK RKREVASENA AAHSGSIQED DDDAGVDEES  540
QILANDKVGE NMEGNIEEEE EAEEEAFHPE DDVAYDDEAA DQELEEHQNV EAAAEDYDYE  600
AADANTAAGQ ELEEHQDVEA AAEDYDYEAA DVNAEEDNEY QEYQDDDDDL EDDDDDFARK  660
VGVMIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G384900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954519.10.0zinc finger CCCH domain-containing protein 19
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLK3YQN50.0K3YQN5_SETIT; Uncharacterized protein
STRINGSi016579m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]