PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G341000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 427aa    MW: 44757.9 Da    PI: 7.5785
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G341000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30176235159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Sevir.1G341000.2.p 176 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 235
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-32161237IPR003657WRKY domain
SuperFamilySSF1182901.96E-27169237IPR003657WRKY domain
PROSITE profilePS5081128.529171237IPR003657WRKY domain
SMARTSM007741.4E-37176236IPR003657WRKY domain
PfamPF031066.8E-27177235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MQEEMEKMKE ENRMLRRVVD RTVRDYYELQ MKLAAYQQQP ADEPKEPEVF LSLGAAAAAT  60
TGGFPEPKRK EQAARRPSVG SDDTDDGKED LGLSLSLRAS SSYEEEKMEA AHDFDGGASV  120
AGADGKAKGY ALLESSKLGA PAAGDLATAG ITSQSVNPAN RKTRVSVRVR CQGPTMNDGC  180
QWRKYGQKVA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED MSILVTTYEG THNHPLPVGA  240
TAMASTTSAA ATFMLLSSTS SSSSISEAAG GGGSAAPPYY LSPYLLNSTS HHSSASPLLS  300
APSSMPSAAP GSASGMQHLN LFGHSSMLAH QQAPHLKYPW SSSEPSHGGS GGLAGSKRPF  360
WSTAGDEKAA TLPDNVGAVM SDPNKFSVAI AAAINSFMGK DSGKDGESSS SKSSNKWGVV  420
ESLPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-221762371777Probable WRKY transcription factor 4
2lex_A9e-221762371777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G341000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681574.10.0probable WRKY transcription factor 9
TrEMBLK3YR970.0K3YR97_SETIT; Uncharacterized protein
STRINGSi016791m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-50WRKY DNA-binding protein 9