PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G339900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 504aa MW: 53875 Da PI: 7.0738

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G339900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	38.2	4e-12	93	181	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 +q+lws+ De++lL + f+++tg p d a++ + +sis ++ + +K+ rL Kf + + s + +hd+ + +ls Sevir.1G339900.1.p 93 VQSLWSDADEVTLLAAAAAFRERTGRVPRLpDAAALFGSIGDSISPHIDEVKAYDKLSRLESKFLHGASG-------SPAGTHDRRVHDLS 176 799*********************77766*****************************998888.......78899***** PP DUF573 93 kkiWg 97 k+Wg Sevir.1G339900.1.p 177 TKVWG 181 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.1E-12	94	181	IPR007592	Protein of unknown function DUF573
Pfam	PF04504	9.0E-9	331	412	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MPSDQLSAST VDADAAPASL SSPRWKKPSS GPHPRTGDCD RGPNPSPLGA PSCRSELKRR 60 LRESAEAARG SGDGGRQRLG LAGVTVGVGH GAVQSLWSDA DEVTLLAAAA AFRERTGRVP 120 RLPDAAALFG SIGDSISPHI DEVKAYDKLS RLESKFLHGA SGSPAGTHDR RVHDLSTKVW 180 GLANVVSPPE DDSDGQDAEE SCSDERRLII ERAPPVDALM PPDAATLDAD AAPAPPSPPI 240 AKKHPPSPQR GMDGDRQDPN SSPRGSPSRR SEPNRRLRTS AESTVAAARG SNVDGGHGDV 300 QSLEPGGVAV DVGQRLEPAD DGGHGAAPNY PRTWSDADEV TLLEAAAAFR ERTGQIPQKR 360 EYGTQGGSIS PHIDEAKVYH KLRRFKSKFR HEAPGKSATG HDRLVHDLCA KVRGFGNTVA 420 RDASTVMPVV TEVLAEYWKM NERALAGFPL EKGLSLLSKK EGRLMETRWR KQLDEEMQTQ 480 MQRHDLAKEI CVLLNDTVKG LSS*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MPSDQLSAST VDADAAPASL SSPRWKKPSS GPHPRTGDCD RGPNPSPLGA PSCRSELKRR  60
LRESAEAARG SGDGGRQRLG LAGVTVGVGH GAVQSLWSDA DEVTLLAAAA AFRERTGRVP  120
RLPDAAALFG SIGDSISPHI DEVKAYDKLS RLESKFLHGA SGSPAGTHDR RVHDLSTKVW  180
GLANVVSPPE DDSDGQDAEE SCSDERRLII ERAPPVDALM PPDAATLDAD AAPAPPSPPI  240
AKKHPPSPQR GMDGDRQDPN SSPRGSPSRR SEPNRRLRTS AESTVAAARG SNVDGGHGDV  300
QSLEPGGVAV DVGQRLEPAD DGGHGAAPNY PRTWSDADEV TLLEAAAAFR ERTGQIPQKR  360
EYGTQGGSIS PHIDEAKVYH KLRRFKSKFR HEAPGKSATG HDRLVHDLCA KVRGFGNTVA  420
RDASTVMPVV TEVLAEYWKM NERALAGFPL EKGLSLLSKK EGRLMETRWR KQLDEEMQTQ  480
MQRHDLAKEI CVLLNDTVKG LSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G339900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454616.1	3e-89	uncharacterized protein LOC8075205
TrEMBL	K3YRV9	0.0	K3YRV9_SETIT; Uncharacterized protein
STRING	Si017003m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2682	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00250.1	6e-08	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sevir.1G339900.1.p