PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.1G333900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 344aa MW: 36299.2 Da PI: 7.3836 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.4e-13 | 128 | 179 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr+++P++ ++++ + a+i+ A++++k+L+ Sevir.1G333900.1.p 128 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 179 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.71E-13 | 126 | 183 | No hit | No description |
PROSITE profile | PS50888 | 15.561 | 127 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-17 | 127 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-11 | 128 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-14 | 128 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-10 | 133 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MALEAVVFPK EHLACTDKAG VAAHPASLGC GFDIDDLEEK SGVVLQEEAA AAALPLGASA 60 ATAWDAALCP CSVTPGAVEE CWDAQRRLSA SPPPVPVAPG RGKAAASAAR RRRRRPKAVK 120 NTEEMESQRR NHIAVERNRR RQMNEYLAVL RSVMPPSYAQ RGDQASIVAG AINFVKELEQ 180 LLQSLEAQKR RAGSCTEPQP AAAPFAGFFT FPQYSTGATG AVGSSDSSSS AGGDQSGGGG 240 CAGARRGVAD IEVAVAESHA NVKVLAPRRP RQLLRMVVAL QCLGLTVLHL NVTTTADHMA 300 FYSFSLKMED ECRLSSVDDI AAAVNEIVAK VFDERVSQLL AAY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 109 | 114 | RRRRRR |
2 | 129 | 139 | RNHIAVERNRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.1G333900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT060512 | 0.0 | BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953984.1 | 0.0 | transcription factor bHLH94 | ||||
TrEMBL | K3YTV5 | 0.0 | K3YTV5_SETIT; Uncharacterized protein | ||||
STRING | Si017701m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10462 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22490.1 | 2e-50 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.1G333900.1.p |