 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.1G294700.3.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
bHLH |
| Protein Properties |
Length: 335aa MW: 34967.7 Da PI: 8.2522 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.1G294700.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 28.5 | 2.7e-09 | 157 | 204 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR+ri +++ L+el+P + sk Ka +L + ++Y++sLq
Sevir.1G294700.3.p 157 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 204
8*************************9....556*****************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MARCQGTVES LCQGLLDLDD DKFGAMCSAF GYLQEWPDLG AMCGASLGAP AAAAPGAGDG 60
NDTSSCSGSA GAGGFRKRRP DAYLDAKGDG NDMSKRPRGK QQQLGGLGEI AAPGKGKQER 120
PKAGTKKKAE AASTAAAAGQ KTDYIHVRAR RGQATDSHSL AERVRRERIS ERMRYLQELV 180
PGCSKVTGKA GMLDEIINYV QSLQKQVEFL SMKIAASNPV VSFDIVEDLF GRQLKQACNP 240
AALPAMALPA GQLEPACLQM NPMQQVHPSA AAGSTGFGLD MVVNNLYPPP AAARCPVSAA 300
TPVTAAAGPS IEPCLNVRDR ESVVLDSASF RSLN*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT066715 | 0.0 | BT066715.1 Zea mays full-length cDNA clone ZM_BFb0058C16 mRNA, complete cds. |
| GenBank | KJ726861 | 0.0 | KJ726861.1 Zea mays clone pUT3402 bHLH transcription factor (bHLH29) mRNA, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G34530.1 | 4e-35 | cryptochrome-interacting basic-helix-loop-helix 1 |
