PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G279100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 432aa    MW: 45441.5 Da    PI: 9.4306
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G279100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.63.3e-30105205195
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+kv tpsdv+k++rlv+pk++ae++      g  +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++ 
  Sevir.1G279100.1.p 105 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldaaG--SEKGLLLSFEDTAGKHWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAGDTVSFSRA 193
                         89****************************744..357789************************************************65 PP

                         .SS.SEE..EEE CS
                  B3  86 .gr.sefelvvk 95 
                           +  + +l++ 
  Sevir.1G279100.1.p 194 aADdAGHRLFID 205
                         333355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-4098209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29102211IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-25103192No hitNo description
PROSITE profilePS5086314.424105209IPR003340B3 DNA binding domain
PfamPF023624.2E-27105209IPR003340B3 DNA binding domain
SMARTSM010192.9E-21105210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDQFAGASGR FSREEEADEE QEDASNSPRR EISFMPAAAA ATASLSSAAA SASASTSASA  60
SASGTSSAAP FRSASGDGAG ASGSGGGGGG GGAVDVEAVE KEHMFDKVVT PSDVGKLNRL  120
VIPKQYAEKY FPLDAAGSEK GLLLSFEDTA GKHWRFRYSY WNSSQSYVMT KGWSRFVKEK  180
RLVAGDTVSF SRAAADDAGH RLFIDWKRRV DTRGPLRFSG LALPMPLASH HFGGPHHYSP  240
WGFGVGGGGG GGGFFMPPSP PATLYEHHRL RQSLDFRGMT YPAPAVGRQL LFFGSARSTM  300
PPHAPLHPPR APPMPLHYTL QPSSAGVAAA ASRPVVLDSV PVIESPTTAA KRVRLFGVNL  360
DNNNNSQSDG GEASHQGNVL SLQMPGWQQR STPTLRLLEL PRHGAESSAA SSPSSSSSSK  420
REARSALDLD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-561002093113B3 domain-containing transcription factor NGA1
5os9_B3e-561002093113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G279100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953463.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-141Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLK3Z1230.0K3Z123_SETIT; Uncharacterized protein
STRINGSi020241m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-59B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]