PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G279100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 432aa MW: 45441.5 Da PI: 9.4306 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.6 | 3.3e-30 | 105 | 205 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ g +e++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++ Sevir.1G279100.1.p 105 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldaaG--SEKGLLLSFEDTAGKHWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAGDTVSFSRA 193 89****************************744..357789************************************************65 PP .SS.SEE..EEE CS B3 86 .gr.sefelvvk 95 + + +l++ Sevir.1G279100.1.p 194 aADdAGHRLFID 205 333355555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-40 | 98 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-29 | 102 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.00E-25 | 103 | 192 | No hit | No description |
PROSITE profile | PS50863 | 14.424 | 105 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-27 | 105 | 209 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-21 | 105 | 210 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MDQFAGASGR FSREEEADEE QEDASNSPRR EISFMPAAAA ATASLSSAAA SASASTSASA 60 SASGTSSAAP FRSASGDGAG ASGSGGGGGG GGAVDVEAVE KEHMFDKVVT PSDVGKLNRL 120 VIPKQYAEKY FPLDAAGSEK GLLLSFEDTA GKHWRFRYSY WNSSQSYVMT KGWSRFVKEK 180 RLVAGDTVSF SRAAADDAGH RLFIDWKRRV DTRGPLRFSG LALPMPLASH HFGGPHHYSP 240 WGFGVGGGGG GGGFFMPPSP PATLYEHHRL RQSLDFRGMT YPAPAVGRQL LFFGSARSTM 300 PPHAPLHPPR APPMPLHYTL QPSSAGVAAA ASRPVVLDSV PVIESPTTAA KRVRLFGVNL 360 DNNNNSQSDG GEASHQGNVL SLQMPGWQQR STPTLRLLEL PRHGAESSAA SSPSSSSSSK 420 REARSALDLD L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-56 | 100 | 209 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-56 | 100 | 209 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G279100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953463.1 | 0.0 | B3 domain-containing protein Os02g0683500 | ||||
Swissprot | Q6EU30 | 1e-141 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
TrEMBL | K3Z123 | 0.0 | K3Z123_SETIT; Uncharacterized protein | ||||
STRING | Si020241m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 3e-59 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G279100.1.p |
Publications ? help Back to Top | |||
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