PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G265600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 531aa    MW: 56464.5 Da    PI: 6.3767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G265600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05105122219
                         EETTTTEEESSHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                         +C++Cgk F+++ +L  H
  Sevir.1G265600.1.p 105 VCENCGKEFTSWKSLLDH 122
                         6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.63557IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9333557IPR007087Zinc finger, C2H2
SuperFamilySSF576677.04E-63557No hitNo description
PfamPF139122.0E-53557IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SuperFamilySSF576677.04E-699124No hitNo description
SMARTSM00355180104124IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39104131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-7232255No hitNo description
SMARTSM003550.13233255IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221233260IPR007087Zinc finger, C2H2
PfamPF139124.2E-9233257IPR007087Zinc finger, C2H2
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-7344371No hitNo description
PfamPF139127.3E-13348372IPR007087Zinc finger, C2H2
SMARTSM003551.6349371IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995349371IPR007087Zinc finger, C2H2
PROSITE patternPS000280351371IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MAMVMENQQP LARMPLVPAP PVPPPPPPLP QAYKHRCKVC KKGFMCGRAL GGHMRAHGVT  60
DDGLSADDAL DDDSSEAGSA STATATAKRM YALRTNPGRL RNCRVCENCG KEFTSWKSLL  120
DHGRCNYDEE EGDLDGNIGD ADNDGEEGEE LALASGWSKG KRTRRAKVMV VGNGFITDEQ  180
LPAPSSEEED LANFLVKLSS SSSATQPHVI IEDDQESCVV LPHHVSTVPR GMFECKACKK  240
VFTSHQALGG HRASHKKVKG CFAAKLESNR NDPPQPIVSS ASDKVIVDAI PAMVGTERNP  300
TSVNGNAEGD AVNIGTSVVA MATAAPEMAV DEVPAPSTAA PFKKKGKVHE CSICHRVFMS  360
GQALGGHKRC HWLTTGAGDP NAAVAKLQPF VTQDHVMHAM CQQLTLGRPM FDASDTFLDL  420
NVPSNPSAEP AAARQAAELN DSVLSLNAPA SLYMHSWAGH SNASNMNNRA TSGHYDAAEA  480
TATEDEADSR GAKRAKIRDL KDMNMGGESS PWLQVGIGLP SKIDEKATQA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G265600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075597e-36AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence.
GenBankAP0050727e-36AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0052897e-36AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149587e-36AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126107e-36CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955118.10.0uncharacterized protein LOC101782881
TrEMBLA0A368PPR90.0A0A368PPR9_SETIT; Uncharacterized protein
STRINGSi019899m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-19C2H2 family protein