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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.1G244400.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
MYB |
Protein Properties |
Length: 250aa MW: 28143.5 Da PI: 6.2537 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.1G244400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd +lv ++++G +W++ ++ g+ R++k+c++rw +yl
Sevir.1G244400.1.p 14 RGPWTPEEDRILVAHIERHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61
89******************************99************97 PP
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2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w++yl
Sevir.1G244400.1.p 67 RGNFTREEEDAIIHLHTVLGNR-WSAIAARLP-GRTDNEIKNVWHTYL 112
89********************.*********.*************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MGRAPCCEKM GLKRGPWTPE EDRILVAHIE RHGHSNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TREEEDAIIH LHTVLGNRWS AIAARLPGRT DNEIKNVWHT YLKKRLEPKP 120 ATQQAPRRKS KKQQQQQPAE IVMLDGPGST VPVSSPEQSL STSTTSSTDY SAASSVENNA 180 DSSFTSEEDY QIEDSFWSET LAMTVDSSDS FGMEREDACV EAAPSANDDM DFWLKLFMQA 240 SDMQNLSQI*
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Functional Description ? help
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Source |
Description |
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU973471 | 1e-164 | EU973471.1 Zea mays clone 399373 myb-related protein Myb4 mRNA, complete cds. |