PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G236300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 678aa    MW: 71508 Da    PI: 6.2359
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G236300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.4e-14280339155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Sevir.1G236300.1.p 280 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 339
                         57*******************666664477446**********99*************98 PP
2AP249.88.6e-16382433155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Sevir.1G236300.1.p 382 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 433
                         89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-11280339IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-16280349IPR016177DNA-binding domain
CDDcd000186.67E-20280349No hitNo description
Gene3DG3DSA:3.30.730.108.0E-15281348IPR001471AP2/ERF domain
PROSITE profilePS5103218.861281347IPR001471AP2/ERF domain
SMARTSM003801.0E-28281353IPR001471AP2/ERF domain
PRINTSPR003673.5E-6282293IPR001471AP2/ERF domain
PfamPF008473.0E-10382433IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-18382443IPR016177DNA-binding domain
CDDcd000182.10E-23382443No hitNo description
Gene3DG3DSA:3.30.730.102.5E-18383442IPR001471AP2/ERF domain
PROSITE profilePS5103219.467383441IPR001471AP2/ERF domain
SMARTSM003808.1E-34383447IPR001471AP2/ERF domain
PRINTSPR003673.5E-6423443IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MASANNWLGF SLSGQDNPQA NQDSSPAAAG IDISGATDFY GLPTQQGSDG HLGVPGLRDD  60
HASYGIMEAF NRSQQETQDW NMRGLDYNGG ASELSMLVGS SGGKRAVEDG EPKLEDFLGG  120
NSFVSEQDQS GGYLFSGVPM ASSTNSNSGS NTMELSMIKT WLRNNQVPQP QPPAPHQAAP  180
QPEEMSTDAS ASSFGCSDSL GRNGTVAAGS SQSLALSMST GPQHLPMVVA GGGGGASGAA  240
ASESTSSENK RASGAMDSPS SGAIEAVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD  300
NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGT TTTTNFPISN YEKELEEMKH  360
MTRQEYIAYL RRNSSGFSRG ASKYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTEEEA  420
AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESSTLPVGG AARRLKDAVD HVEAGATIWR  480
ADMDAGVISQ LADAGMGAYA SYGHHGWPTI AFQQPSPLTV HYPYGQPSRG WCKPEQDAAV  540
AAAAHSLQDL QQLHLGSAAH NFFQASSSST VYNGGGASAA GYQGLGSGGG GSFLMPSSTV  600
VADQGHSSTA NQGSTCSYGD DQDGKLIGYD AMAAAGGDPY AAARSGYQFS QGSGSTVSIA  660
RANGYSNNWS SPFNGMG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G236300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953100.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN21e-136BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A368PQK70.0A0A368PQK7_SETIT; Uncharacterized protein
STRINGSi016558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-125AP2 family protein