PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.1G228600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 260aa MW: 27804.2 Da PI: 4.6031 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.1 | 1.5e-07 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e ++ C ++ lC+ C +e+H H++ p Sevir.1G228600.1.p 4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46 7******99*********************6678888888877 PP | |||||||
2 | zf-B_box | 27 | 9.3e-09 | 54 | 85 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ ++ek + +fC +++ l+C+dC + +H Sevir.1G228600.1.p 54 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85 689**************************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.011 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.22E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.2E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.902 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-6 | 54 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.41E-7 | 55 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MKIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLEAL SARLPRCDVC 60 QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGAASTC SAGGCDAHDS 120 DHHAPPKATV EPPQQPAVSA EAQQVPSPPQ FLPQGWAVDE LLQFSDYESG DKLQKESPLG 180 FKELEWFADI DLFHDQAAPK AGRTLAEVPE LFGSQAASDA AYYRPSKAAG AGAGVRQNKK 240 ARIEVTDDEE DYLIVPDLG* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.1G228600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT039586 | 0.0 | BT039586.1 Zea mays full-length cDNA clone ZM_BFc0031F03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953029.1 | 0.0 | B-box zinc finger protein 25 | ||||
Swissprot | Q9SID1 | 9e-79 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A368PNF3 | 0.0 | A0A368PNF3_SETIT; Uncharacterized protein | ||||
STRING | Sb04g025400.1 | 1e-157 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3202 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31380.1 | 4e-81 | salt tolerance homologue |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.1G228600.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|