PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G227600.5.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 187aa MW: 20223.9 Da PI: 8.6575

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G227600.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.6e-13	122	167	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq Sevir.1G227600.5.p 122 SIAERERRTRISEKLRKLQELVPHM----DKQTSTADMLDLAVEHIKGLQ 167 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.405	116	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-16	119	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.87E-13	120	171	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.0E-15	121	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-13	122	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	122	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKPSQFNFTR PQPGGAAGHL SQISEDGAFP PGLVGDRAGE SSSSGGGAAA ARSFSGGFSI 60 VGPWEESRDI IATLGAYDSQ FSGAMAGTAL EMAGMDRYMQ LQPDQMPFKV RAKRGCATHP 120 RSIAERERRT RISEKLRKLQ ELVPHMDKQT STADMLDLAV EHIKGLQSEL QALKHEQEKC 180 TCCRKR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G227600.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954725	1e-123	EU954725.1 Zea mays clone 1479278 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953019.1	1e-135	transcription factor bHLH128
Swissprot	Q8H102	3e-46	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A368PNF0	1e-134	A0A368PNF0_SETIT; Uncharacterized protein
TrEMBL	A0A368PP15	1e-133	A0A368PP15_SETIT; Uncharacterized protein
TrEMBL	K3YSF0	1e-131	K3YSF0_SETIT; Uncharacterized protein
STRING	Si017194m	1e-132	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	8e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.1G227600.5.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]