PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G224600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 953aa MW: 106072 Da PI: 9.2657 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.5 | 6.3e-10 | 315 | 396 | 10 | 97 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + + l +p a + + +++++ led++ r+ +v+l + +g+ + +GW Fv+++ +k g+f++F+++ r++f v++f Sevir.1G224600.2.p 315 NYFEEFLLIPPAVAPKLEDL--TNRDVYLEDSEKRRSKVRL--SVVDGSLAFHQGWDIFVSDHLIKLGEFLLFEYTARKRF--SVRIF 396 44555688999998888655..4568***************..99999999************************998999..77776 PP | |||||||
2 | B3 | 40.9 | 3.6e-13 | 863 | 945 | 11 | 96 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 +++++l lpk+ +++ ++k + ++l+d+ +r W+v + ++ + lt+GWk+Fv n+L++gD + ++ + ++ e+v++v Sevir.1G224600.2.p 863 TTRKWLELPKSLFDTVKQKRHDRNVIMLKDPMNRLWTVLY--HENPVFMGLTAGWKHFVAGNNLQTGDLCKLTK--EaDGDEPVFSV 945 4567899******999888888899***************..*******************************3..33666677665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.278 | 306 | 399 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.52E-9 | 307 | 396 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-14 | 308 | 399 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-13 | 308 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-4 | 309 | 399 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-8 | 313 | 396 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.842 | 853 | 951 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-6 | 854 | 949 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-13 | 854 | 945 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-13 | 860 | 949 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.8E-10 | 863 | 944 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.01E-12 | 864 | 949 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 953 aa Download sequence Send to blast |
MRGGVSGVTN GKTSTAAILE MGKQKEGRAS SNKNMMADDR EKKNKTTTWN GHNKVKSSKK 60 VSTTSLEKMR KKEKLCNANN KKKMQICDDE EGKNRKESTT ISERKDKEKM NKTHKEKMRA 120 ANSKERKILS GHDGVKKSVE VSTAFFGKEK KGKRLNKTIN EELQSDEDEE EGVWNYDGKV 180 KNGKVATAFS EEEKRKRRPN NNTEKETAAL TPAVKEKRMR PSESTEMMML HDKPNGRNVA 240 SNVSKEKKMD TSSGSNYKKR KREEPDSLSK KEKRVWCNAS DKKIYSGTVQ EKKICGSGKE 300 KNRQAPFTFF KFIYNYFEEF LLIPPAVAPK LEDLTNRDVY LEDSEKRRSK VRLSVVDGSL 360 AFHQGWDIFV SDHLIKLGEF LLFEYTARKR FSVRIFGIDS CERLDFKKDP KRVEQGIGYG 420 PPQDNNNGSL IDRQCKTKGT SPLHSKKKTV ILISDSGISA DNEDMLNITS DADSTHHVTI 480 NTNKDLKRVQ SGVGNLPDGV CRTKCISPPC SEGKTSSEII VTGAAPLMHE NDGRVGHELE 540 KHDLDEDLMR KQGINSIPSD SITAVGKHQN HSETIVSQNI YRKYAAPGGF RCLEKWTKAI 600 VNSPATLDGT VPIEPENTRK TGSILVDGYG SIGLNAGNEY FCSEDHHTLV LPVFTMPVKE 660 PLSADRVSNF RHVGTDTDHS INEKGGGAAV QIQTQGEQLE PVGSIVISQS NNIPLSANTA 720 VLGEYGALGR NPAGPEGTCA FVESMLTVPV EKPLSPDGIS KCGSSRTEID HNVNGKGTIV 780 QLETNMDQVE LVGSSVCSQS SNVAMHANHV VVHEPEHFFS RQEGRKSANC AMTESLLPIK 840 DKILELDGHS LLKFSLQLCV PDTTRKWLEL PKSLFDTVKQ KRHDRNVIML KDPMNRLWTV 900 LYHENPVFMG LTAGWKHFVA GNNLQTGDLC KLTKEADGDE PVFSVQITKR RL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G224600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952993.1 | 0.0 | B3 domain-containing protein Os02g0598200 isoform X2 | ||||
TrEMBL | K3YPQ3 | 0.0 | K3YPQ3_SETIT; Uncharacterized protein | ||||
STRING | Si016245m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 3e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G224600.2.p |