PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G208900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family EIL
Protein Properties Length: 473aa    MW: 51306.9 Da    PI: 4.8943
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G208900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3351.22.1e-107623342266
                         XXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa....tgakksn...............ksneqarrkkmsraQDgiLkYMlkemevcnaqGfv 73 
                         +lk+rmwkdqmll++l++r     +   +a                          ++  + +rk+m raQDg+L++Mlk+me+cna+Gfv
  Sevir.1G208900.1.p  62 DLKRRMWKDQMLLNKLEGRAGAFRAVGAEAglssR-----PlvlpgagaeglaeeeTPDVRCQRKAMLRAQDGVLRHMLKMMEACNARGFV 147
                         9******************9986544443334440.....2556666666666666999******************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--T CS
                EIN3  74 YgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfpl 164
                         Yg i+e g+p++g+sdsLr+WWk++v+fdr+gp+a++       +++ge  l     s  h+l+++qD+tlgS+Lsal+qhc+ppqr+fpl
  Sevir.1G208900.1.p 148 YGVIDEAGEPMSGSSDSLRGWWKDNVSFDRAGPMALT-------VPAGECPL--GIASCLHRLQDIQDSTLGSVLSALIQHCEPPQRSFPL 229
                         ***********************************98.......55666666..458889******************************* PP

                         TT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTT CS
                EIN3 165 ekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqee 254
                         e+g++pPWWPtG+e wwg++g ++++qg ppy+kphdlkkawk+s+L+avikhmsp+++++r+l++qsk+lq+kmsake+ +++++l+qee
  Sevir.1G208900.1.p 230 ERGLAPPWWPTGQEVWWGAQGeVQAHQGVPPYRKPHDLKKAWKISLLSAVIKHMSPRFDQMRKLVWQSKRLQQKMSAKETEVWSKILRQEE 320
                         ******************************************************************************************* PP

                         T-S--XXXXXX..X CS
                EIN3 255 kecatvsahss..s 266
                          + ++++++ +   
  Sevir.1G208900.1.p 321 VLSRRLKTSLQitP 334
                         *9999999864222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.1E-11262320No hitNo description
Gene3DG3DSA:1.10.3180.102.2E-63195329IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167687.59E-56198322IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MNHGIHGRRH PFSEAAMEHD VAHGGGAGGV PAGEAFEAVL DQLEQEELSD SESGSESIEI  60
SDLKRRMWKD QMLLNKLEGR AGAFRAVGAE AGLSSRPLVL PGAGAEGLAE EETPDVRCQR  120
KAMLRAQDGV LRHMLKMMEA CNARGFVYGV IDEAGEPMSG SSDSLRGWWK DNVSFDRAGP  180
MALTVPAGEC PLGIASCLHR LQDIQDSTLG SVLSALIQHC EPPQRSFPLE RGLAPPWWPT  240
GQEVWWGAQG EVQAHQGVPP YRKPHDLKKA WKISLLSAVI KHMSPRFDQM RKLVWQSKRL  300
QQKMSAKETE VWSKILRQEE VLSRRLKTSL QITPLDNDDD DDDDGLEDVV GRAHDKRKRE  360
LISTSRDNSW SSGSGGSRGG SGELAVMLPE LAALVAADDE SRLSPIDELV KLYCSHAPAD  420
QGGGGHPESG AVAVVPPVEL DMFSAGVVPP DVPFDLIGSC SGLDDVFLLM LD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-481963261130Protein ETHYLENE INSENSITIVE 3
4zds_B1e-481963261130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G208900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269670.0KJ726967.1 Zea mays clone pUT3668 EIL transcription factor (EIL5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955019.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9LX161e-89EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLK3YS630.0K3YS63_SETIT; Uncharacterized protein
STRINGSi017107m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.11e-86EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]