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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.1G204000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
Trihelix |
Protein Properties |
Length: 396aa MW: 42316.6 Da PI: 8.4447 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.1G204000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 47.3 | 5.3e-15 | 65 | 146 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W++ + +Li+a e+ +l+rg+l+ p+W+ev++++ ++ g+++ s +qCk++++ l+k+yk +k +++ ++pyfd+l+
Sevir.1G204000.1.p 65 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDVQCKNRIDTLKKKYKIEKSKRGS-------SWPYFDRLD 146
*************************************87889976333778**************99988886.......5******98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MDDDGAASPS PSPSPSPSRS PSPLPVADPV TVAAAPPGHV AVAIPLRKPS PSSGGGGGGG 60 REDAWSDGAT STLIDAWGER FVALGRGSLR HPQWQEVAEV VSSRDGYSKP PKSDVQCKNR 120 IDTLKKKYKI EKSKRGSSWP YFDRLDDLLA PVHKPNSSSS SAAAAARSAP PMVPPRINFP 180 QRTRTPLQPS AGSKRRMPSP PPQASASSES SDGFPPETRS ALPNGKRQRV EEHTPAAAAN 240 GAESSDSRAQ GLRDLAQAIR RLGEVYERVE NAKREQEFRM ERERLDAARE LEDQRAQFFL 300 KMQMELTKAT GGGASAAAAP VAVPIPADGN GTRRTGMAAE VATSSNHRVR YRIKGSIHQH 360 ATQQPHYQNN ATGNGSDSDN KEAEEDAEDE EEESQ*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G14180.1 | 2e-32 | sequence-specific DNA binding transcription factors |