PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G203600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 515aa MW: 54747.1 Da PI: 4.6996 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.5e-11 | 321 | 366 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ + +Ka++L + ++Y+k Lq Sevir.1G203600.1.p 321 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIDYVKFLQ 366 99***********************7.....59*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.72E-17 | 314 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-12 | 314 | 370 | No hit | No description |
PROSITE profile | PS50888 | 17.18 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-16 | 318 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.2E-9 | 321 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-13 | 322 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MGGFVDPFVP APAWPQDMVF TGTSWSGSAS SLADSAGTYL AAAPDEDTEF HLQNRSKPVF 60 LNGNAKEILS SVELHEQFLQ AQLQDDVTQG LNFEMDGALM ASTLGSVLST PSAISLADSA 120 PVVCSSNDSS GSEQSGLPQF LLGEQSVPSA AWPSTFMQIP SLVGEETSKS FGFGAVCNDD 180 LLREACAADG KKYPQLGNMP SVPLQLHNDV EFNTGKMLSF APGPGQQVNT NFEDLQISQK 240 EFSSLHHLNL SSLVSGQLSS FNATGVAHNP KQSNEVSSGK NGLNAPPFMA RSEVPNGSGI 300 AANGAPKPRV RARRGQATDP HSIAERLRRE KISDRMKNLQ ELVPNSNRTD KASMLDEIID 360 YVKFLQLQVK VLSMSRLGAT EAVVPLLTES QTESSSGGLL LSPRSGRQQA GRSSLLGQSE 420 LRDGASFEQE VMQLMENNMT TAMQYLQSKG LCLMPIALAS AISDQKGTSS EAVRPVNSGA 480 TDEEDGAGGE NHDAKEMLRG LNAFGSAREM KSRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G203600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974956 | 1e-145 | EU974956.1 Zea mays clone 461679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952733.1 | 0.0 | uncharacterized protein LOC101783147 | ||||
TrEMBL | K3YRP5 | 0.0 | K3YRP5_SETIT; Uncharacterized protein | ||||
STRING | Si016939m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 1e-52 | LJRHL1-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G203600.1.p |