PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G192200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 304aa    MW: 32004.2 Da    PI: 6.8055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G192200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09105150655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++Er RR++++  f+ L +l+P+ +     kK++ ++ + +++++IksL+
  Sevir.1G192200.1.p 105 IIIERERRRKMKGMFNSLLDLMPHvP-----KKVDQVTLVDETINFIKSLE 150
                         589*********************77.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.20199149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11102161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-7105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8105155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11106162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-8106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAQDGPHGHQ DTTSSNERSF VPPTAVNFVG PAENNNGGSK IGSPVTMDAG KGKEVIPNAI  60
QGGEHGSPSG GEANAGRSGG KNAGNGLAKG ESSMAADDGN LKVNIIIERE RRRKMKGMFN  120
SLLDLMPHVP KKVDQVTLVD ETINFIKSLE QTKAQLEKKK QEQVLVRQAA ASSMSMPRTA  180
HGMAALSDGW DPLPQQKPDA SAAAAAGPLE FQTWSAPNVV LSVLTNDEAV INICAPRQPH  240
MLTLVLSVLS KYKIDVTSMQ VVADTAESLL TINTRVNGAS SKNPSAEDIY KLAVSEIVVM  300
LSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G192200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952701.20.0transcription factor bHLH95
TrEMBLK3YUG20.0K3YUG2_SETIT; Uncharacterized protein
STRINGSi017908m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-18bHLH family protein