PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.1G192100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 28955.5 Da PI: 9.9405 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.6 | 2.4e-21 | 128 | 177 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +g+W+AeIrdp+ + +r++lg+f t+e+Aa+a++aa+++l+g Sevir.1G192100.1.p 128 GYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFVTPEDAARAYDAAALRLRG 177 8********.**********94....36*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.9E-36 | 128 | 191 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.356 | 128 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-32 | 128 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 128 | 186 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.8E-15 | 128 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-14 | 129 | 140 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.95E-16 | 136 | 187 | No hit | No description |
PRINTS | PR00367 | 4.5E-14 | 167 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 282 aa Download sequence Send to blast |
MRPPPSSTTP TAALRRDTEA AAIAAALAQV IAGGSSGATL THLQKASTAP PLVMPLCSST 60 AVGNHHGHIG PPAYHGETSA HSVSASAVQD RTAPAQSLVP APTEAPMAST WPQGTEQGLP 120 APPAARRGYR GVRRRPWGKW AAEIRDPRKA ARVWLGTFVT PEDAARAYDA AALRLRGSRA 180 KLNFPEDASS LRHLPATVGS WQPASGGDGG MDRPPCPKMV CSDNGRFLGS WNVGTSLASP 240 KAACSTAPVD ATLLCGSHVT GSRGTEDAGN GIEKCNSAKH S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-23 | 129 | 190 | 6 | 68 | ATERF1 |
3gcc_A | 8e-23 | 129 | 190 | 6 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.1G192100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005611 | 8e-62 | AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21. | |||
GenBank | AP014958 | 8e-62 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 8e-62 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821609.1 | 8e-88 | ethylene-responsive transcription factor ERF095-like | ||||
TrEMBL | K3YY07 | 1e-178 | K3YY07_SETIT; Uncharacterized protein | ||||
STRING | Si019157m | 1e-179 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15038 | 11 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61890.1 | 2e-13 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.1G192100.1.p |