PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G178000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 489aa    MW: 53587.9 Da    PI: 7.7898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G178000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000226688123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ C k F r  nL+ H r H
  Sevir.1G178000.1.p 66 YICEVCLKGFQRDQNLQLHRRGH 88
                        89*******************88 PP
2zf-C2H210.90.0014142164123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC  C+k +  +s+ k H + +
  Sevir.1G178000.1.p 142 WKCDRCSKKYAVQSDWKAHTKIC 164
                         58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-66588No hitNo description
Gene3DG3DSA:3.30.160.606.8E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4086688IPR007087Zinc finger, C2H2
SMARTSM003550.186688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035547107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.49E-6137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSHTSEEESL NNFQQQAKLE ACAAGSSKGD TVMPAVKKRR GHPGNLDPDV EVVALSPKTL  60
LATNRYICEV CLKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP ELTCPHHDAS  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALAEDNSRV NHSLATMVGS LHGHQQDIFS HGVPTFPASP TDVIANMSSN  240
DHNSDSHLRS LSPYALITRN TALFSNQISP KDSGFPLDGS ASSYPYMSMN SPYMSATALL  300
QKAAEMGAKT SQDPISPLLL KSFPSNVTTR DHMDISSGSQ GDSLGNSAAN SVGIKTAEDE  360
GSYMSGRSNI LMNSPWVSSY KPTTVPLIGL MNHPFAMRSE KESPGIFPGS QMQHSRQENI  420
SGVGDAGLTQ DFLGLGGSGN LEMSSETYNA DVTALSYSDE QQKPQEHIYS YHQSSLDSTA  480
LEKPIWES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33138200365Zinc finger protein JACKDAW
5b3h_F5e-33138200365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G178000.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849460.0KF184946.1 Saccharum hybrid cultivar R570 clone BAC 166F02 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818794.10.0protein indeterminate-domain 2-like
TrEMBLK3YZI10.0K3YZI1_SETIT; Uncharacterized protein
STRINGSi019690m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2