PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G177100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 29565 Da PI: 9.5655 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.3e-19 | 86 | 135 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa a++ a+++++g Sevir.1G177100.1.p 86 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFDTAEAAAMAYDDAALRFKG 135 7********.**********83....36************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.7E-32 | 85 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-35 | 86 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.225 | 86 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-22 | 86 | 144 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-13 | 86 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 87 | 98 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-14 | 94 | 144 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MSAPATAPSP YHAQAQQHGA YGSTMPYYDV GVGSSAISSH QTGHLAAPAP AMSPHQQATP 60 EAGTAAAAAA ASQAAEVQEG NVMRRHYRGV RRRPWGKWAA EIRDPAKAAR VWLGTFDTAE 120 AAAMAYDDAA LRFKGAKAKL NFPERVRGRT GQGVFLVTPG VPQLPPVAPL PPSPLPTVAV 180 PFPDLMRYAQ LLQGGNSRNV VAGDTGYLAP PPAQASSSVQ ILDFSTRQLL RGSPTTFGRQ 240 PSTTSASMST TTASSSPSMW PHVEATTSGV DETHDESRNA PD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-25 | 85 | 146 | 4 | 66 | ATERF1 |
3gcc_A | 3e-25 | 85 | 146 | 4 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G177100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005749 | 7e-84 | AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17. | |||
GenBank | AP005842 | 7e-84 | AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22. | |||
GenBank | AP014958 | 7e-84 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 7e-84 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | CT831330 | 7e-84 | CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702595.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | K3YUS8 | 0.0 | K3YUS8_SETIT; Uncharacterized protein | ||||
STRING | Si018024m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4447 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 6e-20 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G177100.1.p |