PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G169200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 418aa    MW: 46942 Da    PI: 5.6686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G169200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00044467223
                        EETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                        +C+dCgk+++++ +   H ++  H
  Sevir.1G169200.1.p 44 VCSDCGKPCRSQTEVDLHTKRtgH 67
                        8***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.8.109.2E-1192160No hitNo description
SuperFamilySSF469348.62E-16103169IPR009060UBA-like
CDDcd142901.40E-19115163No hitNo description
PROSITE profilePS5003010.74115156IPR015940Ubiquitin-associated domain
SMARTSM001650.0033117155IPR015940Ubiquitin-associated domain
PfamPF006275.7E-6117153IPR015940Ubiquitin-associated domain
SuperFamilySSF1435033.27E-28306413IPR018997PUB domain
CDDcd104619.62E-65311417No hitNo description
PfamPF094091.3E-23324395IPR018997PUB domain
SMARTSM005803.0E-25327390IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAGLSLRCGD CGAQLRSVEE AQAHAEATNH ANFVESTEAV LNLVCSDCGK PCRSQTEVDL  60
HTKRTGHKNF ADKTAEAAKP IDLEAPLKPA SSSEDVDAPA SASASEEPQE MVVPEVNKEM  120
LADLEAMGFA TARATRALHF SGNSTIEGAI NWLSEHQEDA DIDEMPLVPA NSKTEDNKPS  180
LTPEEMKIKA QELRERARKK KEEEERRMER EREKERIRIG KELLEAKRIE EQNERKRMIE  240
LRRLEKEEEK RAREKIRQKL EEDKAERRRK LGLPPEDPAA SKPSAPPPVE EKKSALPVRP  300
ATKAEQMRDC LRNLKQQNKD DDAKVKRAFQ TLLTYIGNVA KNPDEEKFRK IRLTNATFQE  360
RVGNLHGGIE FLELCGFEKL EGNEFLFLAR DKVDKAILNT AGAELNSAIT NPFFGVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G169200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0428560.0BT042856.1 Zea mays full-length cDNA clone ZM_BFc0051P17 mRNA, complete cds.
GenBankBT0550290.0BT055029.1 Zea mays full-length cDNA clone ZM_BFc0028E22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952539.10.0caldesmon
TrEMBLK3YST20.0K3YST2_SETIT; Uncharacterized protein
STRINGSi017327m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517