PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sevir.1G165700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 501aa MW: 53490.2 Da PI: 5.8664

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G165700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	69.4	9.5e-22	6	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgk 88 lppG+ F P+de v +yL +++ g +l+++ i + d +++ P++L + +++++e +fF++ + + +g++++r + g W+ +t Sevir.1G165700.1.p 6 LPPGILFAPEDEVAVEHYLLPRLLGWPLPADGLILDDDPLSAPPQELL-ERNGRKEEAFFFAEGQPRCGKGTQQKRtCAGGGWWEgqKTCA 95 79**************************999**********7.456678899**************555566676333333 PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + l+ +ge+ + kk L f+ g k +t Wvmhey++ Sevir.1G165700.1.p 96 EGDKLRVpgGGEAAWRKKALNFHCGGGGKKGSTGWVMHEYAV 137 3333222569999******98888888*******86 PP
2	NAM	53.3	9.1e-17	168	287	11	128
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dkevlskkge 98 d + v +yL ++v +++l+l+ i + d +++ Pw+L + ++++++ +fF+ + k+ +g+r++r + g+W+ + d e l++ Sevir.1G165700.1.p 168 DCDAVAHYLLPRVLRQPLPLDGLILDDDPLSAPPWELL-ERNGRKEDAFFFALGQAKSGKGSRQRRtCAGGGFWNGERTcvDGEELRA--- 254 77889*************999**********7.445677899**************7778994433114443333... PP NAM 99 l.....vglkktLvfykgrapkgektdWvmheyrl 128 + kk + f +g ++ +t Wvmhey++ Sevir.1G165700.1.p 255 PglaggAWRKKAFSFQDGCEKG--STGWVMHEYAI 287 033345899***9876666..8******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-31	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	28.023	6	156	IPR003441	NAC domain
Pfam	PF02365	1.8E-13	7	136	IPR003441	NAC domain
PROSITE profile	PS51005	18.894	158	306	IPR003441	NAC domain
Pfam	PF02365	6.7E-10	168	286	IPR003441	NAC domain
SuperFamily	SSF101941	7.98E-22	168	306	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MAATGLPPGI LFAPEDEVAV EHYLLPRLLG WPLPADGLIL DDDPLSAPPQ ELLERNGRKE 60 EAFFFAEGQP RCGKGTQQKR TCAGGGWWEG QKTCAEGDKL RVPGGGEAAW RKKALNFHCG 120 GGGKKGSTGW VMHEYAVTAP EDLARSPLRL CHIRLSSYGR KQSGAMEDCD AVAHYLLPRV 180 LRQPLPLDGL ILDDDPLSAP PWELLERNGR KEDAFFFALG QAKSGKGSRQ RRTCAGGGFW 240 NGERTCVDGE ELRAPGLAGG AWRKKAFSFQ DGCEKGSTGW VMHEYAITAP DHLAASQLRL 300 YRLRFSGHGR KRKREEADNE AAPTTARRRV AEDALLDMPS LHPICSSVAL ADQANVNYVN 360 GAEHHAAAAA EVNCINVNGA QHYAAPVTVS AGHDLTTGGI DTSWDFSILE NFDELDELMS 420 SIGDGGDLPS ANPGVLPAVM SPGACVDADA AVSGLFYQAA AYPGVGTGLV APSAPGMYRG 480 CMEPPGSFFS PVPHHFYAAC *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MAATGLPPGI LFAPEDEVAV EHYLLPRLLG WPLPADGLIL DDDPLSAPPQ ELLERNGRKE  60
EAFFFAEGQP RCGKGTQQKR TCAGGGWWEG QKTCAEGDKL RVPGGGEAAW RKKALNFHCG  120
GGGKKGSTGW VMHEYAVTAP EDLARSPLRL CHIRLSSYGR KQSGAMEDCD AVAHYLLPRV  180
LRQPLPLDGL ILDDDPLSAP PWELLERNGR KEDAFFFALG QAKSGKGSRQ RRTCAGGGFW  240
NGERTCVDGE ELRAPGLAGG AWRKKAFSFQ DGCEKGSTGW VMHEYAITAP DHLAASQLRL  300
YRLRFSGHGR KRKREEADNE AAPTTARRRV AEDALLDMPS LHPICSSVAL ADQANVNYVN  360
GAEHHAAAAA EVNCINVNGA QHYAAPVTVS AGHDLTTGGI DTSWDFSILE NFDELDELMS  420
SIGDGGDLPS ANPGVLPAVM SPGACVDADA AVSGLFYQAA AYPGVGTGLV APSAPGMYRG  480
CMEPPGSFFS PVPHHFYAAC *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G165700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813463.1	0.0	uncharacterized protein LOC112890817
TrEMBL	K3YZR5	0.0	K3YZR5_SETIT; Uncharacterized protein
STRING	Si019775m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-11	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Sevir.1G165700.1.p