PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G116900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 424aa    MW: 48375.1 Da    PI: 8.2424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G116900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05115137123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp Cg +F  + +Lk+H+++H
  Sevir.1G116900.1.p 115 HRCPECGACFQKPAHLKQHMQSH 137
                         79*******************99 PP
2zf-C2H223.61.3e-07143167123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp  dC+ s++rk++L+rH+ +H
  Sevir.1G116900.1.p 143 FICPleDCPFSYKRKDHLNRHMLKH 167
                         78*********************99 PP
3zf-C2H212.40.00047174197323
                         ET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                         C+   C+++Fs k n++rH +  H
  Sevir.1G116900.1.p 174 CTvdGCDRRFSIKANMQRHVKEfH 197
                         88889***************9988 PP
4zf-C2H2163.4e-05209233123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + C+   C+k F+  s L++H  +H
  Sevir.1G116900.1.p 209 FICKeeGCNKAFKYLSKLRKHEESH 233
                         789999***************9988 PP
5zf-C2H220.61.2e-06300324223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+   C +sFs+ksnL++H++  H
  Sevir.1G116900.1.p 300 KCTfeGCERSFSNKSNLTKHMKAcH 324
                         79999*****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355226991IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5112134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.006115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576675.91E-11127169No hitNo description
Gene3DG3DSA:3.30.160.607.6E-12135169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.9E-4143167IPR015880Zinc finger, C2H2-like
PfamPF000962.5E-5143167IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037143172IPR007087Zinc finger, C2H2
PROSITE patternPS000280145167IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-7153202No hitNo description
Gene3DG3DSA:3.30.160.601.3E-8170199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.512172202IPR007087Zinc finger, C2H2
SMARTSM003550.027172197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174197IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-6207233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0078209233IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221209233IPR007087Zinc finger, C2H2
PROSITE patternPS000280211233IPR007087Zinc finger, C2H2
SMARTSM003558.7241266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243266IPR007087Zinc finger, C2H2
SMARTSM0035518269290IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.14E-8284341No hitNo description
PROSITE profilePS5015710.97299329IPR007087Zinc finger, C2H2
SMARTSM003550.002299324IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-8300324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280301324IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-4325352IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.995330356IPR007087Zinc finger, C2H2
SMARTSM003553.8330356IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280332356IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MKESLPPLSH SPPPPPGSGR SPLHSHSSCK LQARRTPVCS DSKSEMCSGD EIDGDASVGQ  60
KGFKDIRRYK CEFCTVVRSK KCLIQAHMVA HHKDELDKSE TYNSNGEKII CEEEHRCPEC  120
GACFQKPAHL KQHMQSHSNE RLFICPLEDC PFSYKRKDHL NRHMLKHQGK LFGCTVDGCD  180
RRFSIKANMQ RHVKEFHEDE NVTKSSQEFI CKEEGCNKAF KYLSKLRKHE ESHVKLDYVE  240
VVCCEPGCMK MFTNVECLKA HNQSCHQHVQ CEICGEKHLK KNIKRHLQAH DEVPTGARMK  300
CTFEGCERSF SNKSNLTKHM KACHDQLKLF ICRVAGCGKA FTYKHVRDNH EKSSAHVYVE  360
GDFEEMDEQL RSRPRGGRKR KALTVETLTR KRVTIPGEAS SLDDGEEYLR WLLSGGDDLG  420
QAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-1811932419188PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-1811932419188PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372380RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G116900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952159.10.0transcription factor IIIA isoform X2
SwissprotQ84MZ41e-117TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A368PJD50.0A0A368PJD5_SETIT; Uncharacterized protein
STRINGSi020193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-120transcription factor IIIA