PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G090100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SBP | ||||||||
Protein Properties | Length: 486aa MW: 51832.9 Da PI: 9.5946 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.4 | 6.2e-41 | 189 | 265 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+hkvCe+hskap+v+v+gle+rfCqqCsrfh l+ fD++krsCrrrL++hn+rrrk+q+ Sevir.1G090100.2.p 189 CQVEGCKIDLSSAKDYHRKHKVCEAHSKAPKVVVAGLERRFCQQCSRFHGLDVFDQKKRSCRRRLNDHNARRRKPQP 265 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.0E-33 | 182 | 250 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.761 | 186 | 263 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-38 | 188 | 268 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.0E-31 | 189 | 262 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MMDDPSTRRT AGIFGSGMGS FGMDWSQKGS VLWDWENLPP IGANGNLVPQ AEAKFAGVEV 60 TRHGSVHSSC GTFSSSSEMG YGSSKSSISA SIDSSPKAGN NMELNFAPAR VPDKYIGKNT 120 DLRTSPSSVI AVSSGEPVLS LKLGKRTYFE DACGGQSVKS SPSDSSIVTP PAAPVKKAKA 180 AQNVQNSYCQ VEGCKIDLSS AKDYHRKHKV CEAHSKAPKV VVAGLERRFC QQCSRFHGLD 240 VFDQKKRSCR RRLNDHNARR RKPQPEAISF GSSRLPAMFY GTDPRQQTSL LFGQAPYGQM 300 RSRASSSWDN PGGAFKFAET KASWLKPAGA TGLDALHLSS QQVWNNIMPH GAHQDFAGFM 360 AFKGTSAKVL NQGVEASVVA SDSNGNPDLQ RALSLLSNNS ADAGNNQPTT QLHPGLSALA 420 STSNAVMQQA SPLGLWQDGT ALDLHARFQA LDPMGNGSAI AAAHEPQLPR PPSYNGSSSH 480 YDLTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-27 | 189 | 262 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 261 | KKRSCRRRLNDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G090100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951927.1 | 0.0 | squamosa promoter-binding-like protein 3 isoform X2 | ||||
Refseq | XP_004951928.1 | 0.0 | squamosa promoter-binding-like protein 3 isoform X2 | ||||
Swissprot | A2X0Q6 | 1e-172 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 1e-172 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A368PKH9 | 0.0 | A0A368PKH9_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Aa03225.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-42 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G090100.2.p |