PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G086200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 218aa    MW: 23677.5 Da    PI: 10.7201
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G086200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.8e-19106160256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++t  q   Le+ F+ ++ +s++e++eLA+++gL+ rqV vWFqNrRa+ k
  Sevir.1G086200.1.p 106 RKKLRLTGAQAAMLEDSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTK 160
                         677889***********************************************98 PP

2HD-ZIP_I/II111.27e-36106195190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+  q+++LE+sF++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+ L+++ ++Lr++
  Sevir.1G086200.1.p 106 RKKLRLTGAQAAMLEDSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDRLADENAGLRRDLADLRAS 195
                         69*************************************************************************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.989102162IPR001356Homeobox domain
SMARTSM003892.0E-15104166IPR001356Homeobox domain
SuperFamilySSF466891.36E-18104171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-18106160IPR009057Homeodomain-like
CDDcd000861.55E-13106163No hitNo description
PfamPF000462.3E-16106160IPR001356Homeobox domain
PRINTSPR000311.8E-6133142IPR000047Helix-turn-helix motif
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PRINTSPR000311.8E-6142158IPR000047Helix-turn-helix motif
SMARTSM003409.2E-11162203IPR003106Leucine zipper, homeobox-associated
PfamPF021832.4E-7162194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSSVTTAGSA EEHSVSVEEF VGTRLSLGIG GGEGSRPRTV QLFGEVLSLQ DDDDDRDAAR  60
HREPAAPAGR KKRDASTAAV GSRQNKKART FQGGDRRSPP SGGGGRKKLR LTGAQAAMLE  120
DSFRAHNILS HAEKQELARR VGLSARQVEV WFQNRRARTK LKQTEVDCEL LRRWCDRLAD  180
ENAGLRRDLA DLRASARLAV CAACRDKQVT ARAGEMA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154162RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G086200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951890.11e-142putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX62e-50HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLK3YVK91e-141K3YVK9_SETIT; Uncharacterized protein
STRINGSi018305m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.12e-27HD-ZIP family protein