PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 23677.5 Da PI: 10.7201

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G086200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.8e-19	106	160	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t q Le+ F+ ++ +s++e++eLA+++gL+ rqV vWFqNrRa+ k Sevir.1G086200.1.p 106 RKKLRLTGAQAAMLEDSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTK 160 677889***********************************************98 PP
2	HD-ZIP_I/II	111.2	7e-36	106	195	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+ q+++LE+sF++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+ L+++ ++Lr++ Sevir.1G086200.1.p 106 RKKLRLTGAQAAMLEDSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDRLADENAGLRRDLADLRAS 195 69*************************************************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.989	102	162	IPR001356	Homeobox domain
SMART	SM00389	2.0E-15	104	166	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.36E-18	104	171	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-18	106	160	IPR009057	Homeodomain-like
CDD	cd00086	1.55E-13	106	163	No hit	No description
Pfam	PF00046	2.3E-16	106	160	IPR001356	Homeobox domain
PRINTS	PR00031	1.8E-6	133	142	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	137	160	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-6	142	158	IPR000047	Helix-turn-helix motif
SMART	SM00340	9.2E-11	162	203	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.4E-7	162	194	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSSVTTAGSA EEHSVSVEEF VGTRLSLGIG GGEGSRPRTV QLFGEVLSLQ DDDDDRDAAR 60 HREPAAPAGR KKRDASTAAV GSRQNKKART FQGGDRRSPP SGGGGRKKLR LTGAQAAMLE 120 DSFRAHNILS HAEKQELARR VGLSARQVEV WFQNRRARTK LKQTEVDCEL LRRWCDRLAD 180 ENAGLRRDLA DLRASARLAV CAACRDKQVT ARAGEMA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	162	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G086200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951890.1	1e-142	putative homeobox-leucine zipper protein HOX26
Swissprot	Q67UX6	2e-50	HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBL	K3YVK9	1e-141	K3YVK9_SETIT; Uncharacterized protein
STRING	Si018305m	1e-142	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	2e-27	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.1G086200.1.p