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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.1G086200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
HD-ZIP |
Protein Properties |
Length: 218aa MW: 23677.5 Da PI: 10.7201 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.1G086200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.2 | 6.8e-19 | 106 | 160 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++t q Le+ F+ ++ +s++e++eLA+++gL+ rqV vWFqNrRa+ k
Sevir.1G086200.1.p 106 RKKLRLTGAQAAMLEDSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTK 160
677889***********************************************98 PP
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2 | HD-ZIP_I/II | 111.2 | 7e-36 | 106 | 195 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rl+ q+++LE+sF++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+ L+++ ++Lr++
Sevir.1G086200.1.p 106 RKKLRLTGAQAAMLEDSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDRLADENAGLRRDLADLRAS 195
69*************************************************************************************965 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MSSVTTAGSA EEHSVSVEEF VGTRLSLGIG GGEGSRPRTV QLFGEVLSLQ DDDDDRDAAR 60 HREPAAPAGR KKRDASTAAV GSRQNKKART FQGGDRRSPP SGGGGRKKLR LTGAQAAMLE 120 DSFRAHNILS HAEKQELARR VGLSARQVEV WFQNRRARTK LKQTEVDCEL LRRWCDRLAD 180 ENAGLRRDLA DLRASARLAV CAACRDKQVT ARAGEMA*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 154 | 162 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |