|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.1G068000.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
Trihelix |
Protein Properties |
Length: 392aa MW: 41531.6 Da PI: 4.2774 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.1G068000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 36.4 | 1.4e-11 | 82 | 162 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...........rergferspkqCkekwenlnkrykkikegekk 70
+Wt e+laL++ + +++ +r+ ++ ++W+ v++++ r+rg +r + +C+ +we l+ +y +++++e +
Sevir.1G068000.1.p 82 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaasealapgpaRRRGSKRAAAECRRRWEALAAEYGAVRRWEVR 162
5*****************************************************************************976 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MDPAAAAQPC VIQALPAHSK ALPPPPLVQA LPAHHSPPAK THPPPAATPT SSSSGPKRRP 60 PPPPLGPAPP SPRRTRSGGA PEWTPAETLA LVAEVAAVDD GWSRSVSAFQ KWAMVAENLA 120 ASEALAPGPA RRRGSKRAAA ECRRRWEALA AEYGAVRRWE VRTGGRYWEM GAAARRKAGL 180 PVEFDAEVYG AMDALIRVEE ALLADAAGGG GGAEEVEGLV GGGASVEVGE QDGVHVREVG 240 EAEDGVQENE TVEEANGEEE DEEEEVEEEE EDDEKQEEMQ VDGSNADASN DLEGHEVGTN 300 SEPEKSQNNA WELANKLQEN AQHIHTILKE EADEDAGQNH ALAGSVSPDA MKTTRQKADE 360 LIKSLGGLVS YLNQFTELVK ENGFENIVGM T*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT034113 | 1e-139 | BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds. |
GenBank | BT085710 | 1e-139 | BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds. |
GenBank | EU969957 | 1e-139 | EU969957.1 Zea mays clone 337834 hypothetical protein mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT4G31270.1 | 1e-09 | sequence-specific DNA binding transcription factors |