PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G065500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SBP | ||||||||
Protein Properties | Length: 430aa MW: 45230.9 Da PI: 7.2341 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.5 | 2.4e-40 | 201 | 277 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+egC+adls ak+yhrrhkvCe+h+ka++v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++ Sevir.1G065500.1.p 201 RCQAEGCKADLSAAKHYHRRHKVCEFHAKAAAVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPA 277 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-33 | 194 | 263 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.12 | 199 | 276 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-37 | 200 | 277 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-30 | 202 | 275 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MMSSRMMNTN AMAAPANDVD FCFGAMQAQQ PYVVGFDAGA MAMPSVERPL LQHHSNLYDS 60 FDLSAAAAAG GFPFQEPGLL PPASLPLAPP SLQLPLLTTS LLGVPTAAEM YHPFGGAGGA 120 AAFLKREDGG GGALVDGGGG TIGLNLGRRT YFSPADVLAV DRLLTRSARL VDGVGMGMGL 180 GMGVLGLGLG AAHHHHQQPP RCQAEGCKAD LSAAKHYHRR HKVCEFHAKA AAVAAAGKQQ 240 RFCQQCSRFH VLAEFDEAKR SCRKRLTEHN RRRRKPAGAQ AGKYSSPPPK RADTTCITTS 300 CNSDHHKSST AAAKSTAISP NGSGVSCLDA MDNGQPSSAA AEPTSLSLAA LPLHDDKDDD 360 GGLDSMLMRQ VQGRRDDDEE HRRFMTSLVM QQQAQNQLDG GGGNILSCSS ASDDQQNGGC 420 NGFFEVDFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 202 | 275 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 275 | KRSCRKRLTEHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G065500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ011614 | 1e-147 | AJ011614.1 Zea mays mRNA for SBP-domain protein 1. | |||
GenBank | EU966891 | 1e-147 | EU966891.1 Zea mays clone 297975 SBP-domain protein 1 mRNA, complete cds. | |||
GenBank | KJ728009 | 1e-147 | KJ728009.1 Zea mays clone pUT6144 SBP transcription factor (SBP10) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951719.1 | 0.0 | squamosa promoter-binding-like protein 5 | ||||
Swissprot | Q0E3F8 | 1e-71 | SPL5_ORYSJ; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A368PHG6 | 0.0 | A0A368PHG6_SETIT; Uncharacterized protein | ||||
STRING | Si017338m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2375 | 35 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 3e-35 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G065500.1.p |