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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.1G050400.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
C3H |
| Protein Properties |
Length: 295aa MW: 30726.9 Da PI: 9.7624 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.1G050400.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.2 | 5.7e-08 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + Ck Gd+C+FaHg+
Sevir.1G050400.1.p 96 KTRLCNKYKTADGCKWGDKCHFAHGE 121
9***********************96 PP
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| 2 | zf-CCCH | 34.8 | 2.8e-11 | 260 | 285 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+ C +fa+ G C +GdrC+FaHg+
Sevir.1G050400.1.p 260 FKTKMCENFAK-GSCTFGDRCHFAHGE 285
69*********.*************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.906 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.72 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.09E-5 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.7E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.2E-14 | 91 | 126 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.02E-8 | 93 | 125 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.2 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.31 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.8E-5 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 3.34E-14 | 155 | 235 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 7.0E-10 | 164 | 234 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 1.3E-14 | 165 | 233 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.865 | 165 | 229 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 5.41E-14 | 167 | 229 | No hit | No description |
| Pfam | PF00013 | 5.1E-11 | 167 | 229 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 6.8E-17 | 258 | 291 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-9 | 259 | 290 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.981 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.7E-7 | 259 | 285 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.7E-8 | 260 | 285 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MEDVRKRGTA DGANGASAGG KRARESESFQ TGVGSKTKPC TKFFSTSGCP FGEGCHFLHC 60
FPGGYQAVSK ITNLGGPAVT PPGRMMMDGP PTPTMKTRLC NKYKTADGCK WGDKCHFAHG 120
ERELGKPMLM DSSTHFPMGP GPTGHFAPPP MVNPGMATPA SFGASATAKI SVDASLAGRI 180
IGRGGVNTKQ ISRVTGAKLA IRDHESDTKL KNIELEGTFD QIKNASAMVG ELIVNISGSA 240
PPPAKNPAGG PHRGGSGSNF KTKMCENFAK GSCTFGDRCH FAHGENELRK PAAA*
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